Job Description Q46814 Confidence 100.00% Date Thu Jan 5 12:34:41 GMT 2012 Rank 18 Aligned Residues 418 % Identity 30% Template c3hrdE_ PDB info PDB header:oxidoreductase Chain: E: PDB Molecule:nicotinate dehydrogenase large molybdopterin PDBTitle: crystal structure of nicotinate dehydrogenase Resolution 2.20 Å

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		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	L	E	V	I	G	K	H	Y	P	K	T	D	A	A	K	M	V	Q	A	K	P	C	Y	V	E	D	R	V	T	A	D	A	C	V	I	K	M	L	R	S	P	H	A	H	A	L	I	T	H	L	D	V	S	K	A	E	A	L	P	G	V	V	H	V	I	T	H	L	N	C	P	D	I	Y	Y	T	P	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	D	Y	Q	V	L	G	K	N	K	V	K	V	D	S	L	E	K	V	M	G	T	A	K	F	A	A	D	Y	S	F	P	D	M	L	Y	A	G	V	F	R	S	T	V	P	H	A	R	I	V	S	L	D	L	S	K	A	R	A	I	D	G	V	E	A	V	L	D	Y	H	A	I	P	G	K	N	R	F	G	I
Template Known Secondary structure					S	S	T	T	S					T	T							T				B	G	G	G				T	T										S	S	S	S	B												T	S	T	T							G	G	G		S	S				B		S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	S	A	P	E	P	S	P	L	D	R	R	M	F	G	K	K	M	R	H	V	G	D	R	V	A	A	V	V	A	E	S	E	E	I	A	L	E	A	L	K	L	I	D	V	E	Y	E	V	L	K	P	V	M	S	I	D	E	A	M	A	E	D	A	P	V	V	H	D	E	P	V	V	Y	V	A	G	A	P
Query Conservation
Alig confidence					.	.	.	.	.	.																																																															.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.																																																															.	.	.	.	.	.	.	.	.
Template Sequence		I	I	K	.	.	.	.	.	.	D	E	P	C	L	V	D	D	K	V	R	R	Y	G	D	A	I	A	V	V	A	A	Q	T	P	D	L	V	Q	E	A	L	D	A	I	T	I	E	Y	E	E	L	E	G	I	F	T	M	E	R	A	L	E	E	D	S	P	A	I	H	G	D	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S		.	.	.	.	.	.		B		S	S		S	S		B		S	T	T									S	S										T													S						S	T	T	S			S	S	T	T	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.	.	.																																																															.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.							.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		D	T	L	E	D	D	N	S	H	A	A	Q	R	G	E	H	M	I	I	N	F	P	I	G	S	R	P	R	K	N	I	A	A	S	I	H	G	H	I	G	D	M	D	K	G	F	A	D	A	D	V	I	I	E	R	T	Y	N	S	T	Q	A	Q	Q	C	P	T	E	T	H	I	C	F	T	R	M	D	G	D	.
Query Conservation																																																																																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	I	H	Q	V	K	H	L	E	Y	G	D	V	D	A	A	F	K	Q	C	D	I	V	V	E	D	T	Y	S	T	H	R	L	T	H	M	F	I	E	P	D	A	G	V	S	Y	Y	D	N	E	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S										S						T	T	S		S																	S	S										T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																														148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	V	I	H	A	S	T	Q	V	P	W	H	L	R	R	Q	V	A	R	L	V	G	M	K	Q	H	K	V	H	V	I	K	E	R	V	G	G	G	F	G	S	K	Q	D	I	L	L	E	E	V	C	A	W	A	T	C	V	T	G	R	P	V	L	F	R	Y	T	R	E	E	E	F	I	A	N	T	S	R	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	L	T	V	V	V	S	T	Q	N	P	H	Y	D	R	G	E	V	A	G	M	L	A	L	P	N	S	K	V	R	I	I	Q	A	T	T	G	G	G	F	G	G	K	L	D	L	S	V	Q	C	H	C	A	L	L	T	Y	H	T	K	K	P	V	K	M	V	R	S	R	E	E	S	T	T	V	S	S	K	R	H
Template Known Secondary structure										S														T			G	G	G							B					T	T	T	T	S	S		S	S													S															S		B
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	K	V	T	V	K	L	G	A	K	K	D	G	R	L	T	A	V	K	M	D	F	R	A	N	T	G	P	Y	G	N	H	S	L	T	V	P	C	N	G	P	A	L	S	L	P	L	Y	P	C	D	N	V	D	F	Q	V	T	T	Y	Y	S	N	I	C	P	N	G	A	Y	Q	G	Y	G	A	P	K	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	M	T	M	H	C	K	T	G	A	T	K	D	G	R	L	Q	A	V	Q	V	E	M	F	G	D	T	G	A	Y	A	S	Y	G	P	A	V	I	T	R	A	T	V	H	C	M	G	P	Y	V	V	P	N	V	R	V	D	A	K	F	V	Y	T	N	N	P	M	S	G	A	F	R	G	F	G	V	P	Q	A	S
Template Known Secondary structure													T	T																S	S		T	T												S	S		S	B			S												S	S	S		B				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		566	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	I	T	M	A	L	A	E	L	A	E	Q	L	Q	I	D	Q	L	E	I	I	E	R	N	R	V	H	E	G	Q	E	L	K	I	L	G	A	I	G	E	G	K	A	P	T	S	V	P	S	A	A	S	C	A	L	E	E	I	L	R	Q	G	R	E	M	I	Q	W
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.
Template Sequence		V	C	H	E	G	Q	M	N	A	L	A	K	A	L	G	M	D	P	I	D	I	R	I	L	N	A	H	Q	V	G	A	K	L	A	T	G	Q	V	L	E	N	.	.	.	.	.	.	.	S	V	G	L	I	E	T	L	E	K	A	R	E	K	A	V	E	V	M	G	Y
Template Known Secondary structure														T	T	T			T	T							B			T	T		B		T	T	S		B			S	.	.	.	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400								.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.