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Job DescriptionQ46814
Confidence100.00%DateThu Jan 5 12:34:41 GMT 2012
Rank2Aligned Residues888
% Identity28%Templatec1vlbA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a
Resolution1.28 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20........ .30.........40.........50.........60..... ....70........
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Query Sequence  MIIHFTLNGAPQELTVNPGENVQKLLFN. MGMHSVRNSDDGFGFAGSDAIIFNGNIVNASLLIAAQ. LEKADIRTAESLG
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Template Sequence  IQKVITVNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGC. EQGQCGACSVILDGKVVRACVTKMKRVADGAQITTIEGVG
Template Known Secondary structure  TT
TTSBTT

TTS

SS.SSSSS
TTTTGGG
BGGGS
TT


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   2.......10.........20.........30.........40 .........50.........60.........70.........80
 
   7980.........90.........100.........110.........120.........130 .........140.........150......
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Query Sequence  KWNELSLVQQAMVDVGVVQSGYNDPAAALIITDLLDRIAAPTREEIDDALSG. . LFSRDAGWQQYYQVIELAVARKNNPQ
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Template Sequence  QPENLHPLQKAWVLHGGAQCGFCSPGFIVSAKGLLDTNADPSREDVRDWFQKHRNACRCTGYKPLVDAVMDAAAVINGKK
Template Known Secondary structure  BTTB

T

SS
TTTT
SS

TT


SSS
STTSS
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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   157..160.........170.........180.........190....... ..200.........210.........220.........230...
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Query Sequence  ATIDIAPTFRDDLEVIGKHYPKTDAAKMVQAKPCYVEDRVT. . . ADACVIKMLRSPHAHALITHLDVSKAEALPGVVHVI
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Template Sequence  PETDLEFKMPADGRIWGSKYPRPTAVAKVTGTLDYGADLGLKMPAGTLHLAMVQAKVSHANIKGIDTSEALTMPGVHSVI
Template Known Secondary structure 
GGGGS



SS


TTS



TTTT
S

TS
TT

SSSS
TSTT
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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   234.....240.........250 .........260.........270.........280.........290.........300.........310
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Query Sequence  THLNCPDIYYTPGGQSA. . . PEPSPLDRRMFGKKMRHVGDRVAAVVAESEEIALEALKLIDVEYEVLKPVMSIDEAMAED
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Template Sequence  THKDVKGKNRITGLITFPTNKGDGWDRPILCDEKVFQYGDCIALVCADSEANARAAAEKVKVDLEELPAYMSGPAAAAED
Template Known Secondary structure 
GGG

S
S

SS

TT
SS
S

SS
SS
STT
SSTT





SSTT
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   241........250.........260.........270.........280.........290.........300.........310.........320
 
   311........320.........330.........340.........350.........360.........370.........380.........390
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Query Sequence  APVVHDEPVVYVAGAPDTLEDDNSHAAQRGEHMIINFPIGSRPRKNIAASIHGHIGDMDKGFADADVIIERTYNSTQAQQ
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Template Sequence  AIEIHPG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TPNVYFEQPIVKGEDTGPIFASADVTVEGDFYVGRQPH
Template Known Secondary structure 


SSTT...................................S
SSS

S




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   321...... ..330.........340.........350.........360.....
 
   391........400... ......410.........420.........430.........440.........450.........460.........
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Query Sequence  CPTETHICFTRMD. GDRLVIHASTQVPWHLRRQVARLVGMKQHKVHVIKERVGGGFGSKQDILLEEVCAWATCVTGRPVL
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Template Sequence  MPIEPDVAFAYMGDDGKCYIHSKSIGVHLHLYMIAPGVGLEPDQLVLVANPMGGTFGYKFSPTSEALVAVAAMATGRPVH
Template Known Secondary structure 

SS


TTS
S
S
T

GGG


S

TTGGGS
SSSS
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   366...370.........380.........390.........400.........410.........420.........430.........440.....
 
   470.........480.........490.........500.........510.........520.........530.........540.........
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Query Sequence  FRYTREEEFIANTSRHVAKVTVKLGAKKDGRLTAVKMDFRANTGPYGNHSLTVPCNGPALSLPLYPCDNVDFQVTTYYSN
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Template Sequence  LRYNYQQQQQYTGKRSPWEMNVKFAAKKDGTLLAMESDWLVDHGPYSEFGDLLTLRGAQFIGAGYNIPNIRGLGRTVATN
Template Known Secondary structure 

SS
B



TT


TT

TTTTTTB




S
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   446...450.........460.........470.........480.........490.........500.........510.........520.....
 
   550.........560.........570.........580.........590.........600.........610.........620.........
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Query Sequence  ICPNGAYQGYGAPKGNFAITMALAELAEQLQIDQLEIIERNRVHEGQELKILGAIGEGKAPTSVPSAASCALEEILRQGR
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Template Sequence  HVWGSAFRGYGAPQSMFASECLMDMLAEKLGMDPLELRYKNAYRPGDTNPTGQEPEVF. . . . . . . . . . . . SLPDMIDQLR
Template Known Secondary structure  S

B


TTTTT

B

TT


TTS


S

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   526...530.........540.........550.........560.........570.........580... ......590...
 
   630......... 640.........650.........660.........670.........680.........690.........700.. .
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Query Sequence  EMIQWSSPKP. . . QNGDWHIGRGVAIIMQKSGIPDIDQANCMIKLESDGTFIVHSGGADIGTGLDTVVTKLAAEVL. . . H
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Template Sequence  PKYQAALEKAQKESTATHKKGVGISIGVYGSGLDGPDASEAWAELNADGTITVHTAWEDHGQGADIGCVGTAHEALRPMG
Template Known Secondary structure 

SSSSSTTT

TTS





SSS
GGGT
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   594.....600.........610.........620.........630.........640.........650.........660.........670...
 
   704.....710.........720.........730.........740.........750.........760.........770.........780...
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Query Sequence  CPPQDVHVISGDTDHALFDKGAYASSGTCFSGNAARLAAENLREKILFHGAQMLGEPVADVQLATPGVVRGKKGEVSFGD
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Template Sequence  VAPEKIKFTWPNTATTPNSGPSGGSRQQVMTGNAIRVACENLLKACEKPGGGYYTYDELKAADKPTKITG. . . . . . . . . .
Template Known Secondary structure 

GGG


BTTTS




S
TT
B
TTSSB

TT


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   674.....680.........690.........700.........710.........720.........730.........740...
 
   784.....790.........800.........810.........820.........830.........840.........850.........860...
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Query Sequence  IAHKGETGTGFGSLVGTGSYITPDFAFPYGANFAEVAVNTRTGEIRLDKFYALLDCGTPVNPELALGQIYGATLRAIGHS
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Template Sequence  . . . . NWTASGATHCDAVTGLGKPFVVYMYGVFMAEVTVDVATGQTTVDGMTLMADLGSLCNQLATDGQIYGGLAQGIGLA
Template Known Secondary structure  ....
TT
B


TTT

SB

S
TTT


SS
S
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   744.....750.........760.........770.........780.........790.........800.........810.........
 
   864.....870.........880.........890.........900.........910.........920.........930.........940...
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Query Sequence  MSEEIIYDAEGHPLTRDLRSYGAPKIGDIPRDFRAVLVPSDDKVGPFGAKSISEIGVNGAAPAIATAIHDACGIWLREWH
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Template Sequence  LSEDFEDIKK. . . . HATLVGAGFPFIKQIPDKLDIVYVNHPRPDGPFGASGVGELPLTSPHAAIINAIKSATGVRIYRLP
Template Known Secondary structure  T



STTT....SSSTTTTT


GGGS
S





TTSGGG



TTGGGSSS



BS
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   820......... 830.........840.........850.........860.........870.........880.........890.....
 
   944.....950....
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Query Sequence  FTPEKILTALE
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Template Sequence  AYPEKVLEALK
Template Known Secondary structure 

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   896...900......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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