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Job DescriptionQ46814
Confidence100.00%DateThu Jan 5 12:34:41 GMT 2012
Rank6Aligned Residues751
% Identity25%Templatec1n62E_
PDB info PDB header:oxidoreductaseChain: E: PDB Molecule:carbon monoxide dehydrogenase large chain; PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state
Resolution1.09 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   167..170.........180.........190.........200.........210.........220.........230.........240......
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Query Sequence  DDLEVIGKHYPKTDAAKMVQAKPCYVEDRVTADACVIKMLRSPHAHALITHLDVSKAEALPGVVHVITHLNCPDIYYTPG
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Template Sequence  EKLQGMGCKRKRVEDIRFTQGKGNYVDDVKLPGMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAADLKPLNLHYM
Template Known Secondary structure 

TT




TTTT


BGGG


TT

S
SS
STT
GGGT
S
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   16...20.........30.........40.........50.........60.........70.........80.........90.....
 
   247..250.........260.........270.........280.........290.........300.........310.........320......
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Query Sequence  GQSAPEPSPLDRRMFGKKMRHVGDRVAAVVAESEEIALEALKLIDVEYEVLKPVMSIDEAMAEDAPVVHDEPVVYVAGAP
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Template Sequence  PTLAG. . . DVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKAMEPDAPLLRED. . . . . . . . .
Template Known Secondary structure 
TTS...
SS
SS
STT
SS






GGGTTSTT




TT.........
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   96...100 .........110.........120.........130.........140.........150.........160...
 
   327..330.........340.........350.........360.........370.........380.........390.........400.. ..
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Query Sequence  DTLEDDNSHAAQRGEHMIINFPIGSRPRKNIAASIHGHIGDMDKGFADADVIIERTYNSTQAQQCPTETHICFTRM. . DG
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Template Sequence  . . . . . . . . . . . . . IKDKMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKDMFTYHRVHPSPLETCQCVASMDKIK
Template Known Secondary structure  .............TTT

TT
SSTT

S

B



SS

TTT
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   164.....170.........180.........190.........200.........210.........220.........230
 
   405....410.........420.........430.........440.........450........ .460.........470.........480...
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Query Sequence  DRLVIHASTQVPWHLRRQVARLVGMKQHKVHVIKERVGGGFGSKQDILLEEVCA. WATCVTGRPVLFRYTREEEFIANTS
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Template Sequence  GELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSF
Template Known Secondary structure  T

SS


GGG

B
S

TTTTSS

SS


S
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   231........240.........250.........260.........270.........280.........290.........300.........310
 
   484.....490.........500.........510.........520......... 530.........540.........550.... ... ..
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Query Sequence  RHVAKVTVKLGAKKDGRLTAVKMDFRANTGPYGNHSLTVPCNGPAL. . SLPLYPCDNVDFQVTTYYSNICPNG. AYQ. GY
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Template Sequence  ARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKASGGVAYRCSF
Template Known Secondary structure 


TT



SS





TT
TTTTGGGTTTTB

S


SS

S
SS
TT
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   311........320.........330.........340.........350.........360.........370.........380.........390
 
   560.........570.........580.........590....... ..600.........610.........620.........630......
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Query Sequence  GAPKGNFAITMALAELAEQLQIDQLEIIERNRVHEGQE. . . LKILGAIGEGKAPTSVPSAASCALEEILRQGREMIQWSS
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Template Sequence  RVTEAVYAIERAIETLAQRLEMDSADLRIKNFIQPEQFPYMAPLGWEYDSG. . . . . . . . . . . . NYPLAMKKAMDTVGYHQ
Template Known Secondary structure  TT

B

GGG
S
TTS



............
T
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   391........400.........410.........420.........430.........440. ........450........
 
   637..640 .........650......... 660.........670.........680.........690......
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Query Sequence  PKPQ. . . . . . . . . . . NGDWHIGRGVAIIMQKSGI. . . . . . . . . PDIDQANCMIKLESDGTFIVHSGGADIGTGLDTVVTK
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Template Sequence  LRAEQKAKQEAFKRGETREIMGIGISFFTEIVGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQ
Template Known Secondary structure  TTS
S

BS


TTT
TT


TTS
S


SSS
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   459460.........470.........480.........490.........500.........510.........520.........530........
 
   697..700.........710.........720.........730.........740.........750.........760.........770......
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Query Sequence  LAAEVLHCPPQDVHVISGDTDHALFDKGAYASSGTCFSGNAARLAAENLREKILFHGAQMLGEPVADVQLATPGVVRGKK
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Template Sequence  IIATELGIPADDIMIEEGNTDTAPYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGL
Template Known Secondary structure  T

GGG
BTTTS




S
TT
TTTTTS
GGG
SSTT
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   539540.........550.........560.........570.........580.........590.........600.........610........
 
   777 ..780.........790..... ....800.........810.........820.........830.........840.........850.
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Query Sequence  G. . EVSFGDIAHKGETGTGFG. . . SLVGTGSYITPDFAFPYGANFAEVAVNTRTGEIRLDKFYALLDCGTPVNPELALGQ
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Template Sequence  PEKFKTMKELAWASYNSPPPNLEPGLEAVNYYDPPNMTYPFGAYFCIMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQ
Template Known Secondary structure  S

TTS
SS


SS
B

TTT


BS
S
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   619620.........630.........640.........650.........660.........670.........680.........690........
 
   852.......860.........870.........880.........890.........900.........910.........920.........930.
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Query Sequence  IYGATLRAIGHSMSEEIIYDAEGHPLTRDLRSYGAPKIGDIPRDFRAVLVPSDDKVGPFGAKSISEIGVNGAAPAIATAI
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Template Sequence  VHGGLTEAFAVAMGQEIRYDEQGNVLGASFMDFFLPTAVETP. KWETDYTVTPSPHHPIGAKGVGESPHVGGVPCFSNAV
Template Known Secondary structure  T



TT

S
STTTS



TTTS
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TTSTT
B


TT
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   699700.........710.........720.........730.........740 .........750.........760.........770.......
 
   932... ....940.........950.....
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Query Sequence  HDAC. . . GIWLREWHFTPEKILTALEK
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Template Sequence  NDAYAFLNAGHIQMPHDAWRLWKVGEQ
Template Known Secondary structure  TTT




S


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   778.780.........790.........800....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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