Job Description Q46814 Confidence 100.00% Date Thu Jan 5 12:34:41 GMT 2012 Rank 5 Aligned Residues 760 % Identity 25% Template c1ffvB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:cutl, molybdoprotein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava Resolution 2.25 Å

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		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	V	I	G	K	H	Y	P	K	T	D	A	A	K	M	V	Q	A	K	P	C	Y	V	E	D	R	V	T	A	D	A	C	V	I	K	M	L	R	S	P	H	A	H	A	L	I	T	H	L	D	V	S	K	A	E	A	L	P	G	V	V	H	V	I	T	H	L	N	C	P	D	I	Y	Y	T	P	G	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	G	M	G	A	S	R	L	R	K	E	D	A	R	F	I	Q	G	K	G	N	Y	V	D	D	I	K	M	P	G	M	L	H	M	D	I	V	R	A	P	I	A	H	G	R	I	K	K	I	H	K	D	A	A	L	A	M	P	G	V	H	A	V	L	T	A	E	D	L	K	P	L	K	L	H	W	M	P	T
Template Known Secondary structure			T		T	T						S	S					T	T	T					G	G	G				T	T										S	S	S	S														S	T	T											G	G	G	T		S
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	P	E	P	S	P	L	D	R	R	M	F	G	K	K	M	R	H	V	G	D	R	V	A	A	V	V	A	E	S	E	E	I	A	L	E	A	L	K	L	I	D	V	E	Y	E	V	L	K	P	V	M	S	I	D	E	A	M	A	E	D	A	P	V	V	H	D	E	P	V	V	Y	V	A	G	A	P	D	T
Query Conservation
Alig confidence					.	.	.																																																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.																																																																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	G	.	.	.	D	V	A	A	V	L	A	D	E	K	V	H	F	Q	M	Q	E	V	A	I	V	I	A	D	D	R	Y	I	A	A	D	A	V	E	A	V	K	V	E	Y	D	E	L	P	V	V	I	D	P	I	D	A	L	K	P	D	A	P	V	L	R	E	D	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	S	.	.	.					S	S			S				S	T	T									S	S																												T	S	T	T				S		G	G	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.																																																																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		95	.	.				.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.			.	.	.
Predicted Secondary structure																																																																													.	.
Query SS confidence																																																																													.	.
Query Sequence		L	E	D	D	N	S	H	A	A	Q	R	G	E	H	M	I	I	N	F	P	I	G	S	R	P	R	K	N	I	A	A	S	I	H	G	H	I	G	D	M	D	K	G	F	A	D	A	D	V	I	I	E	R	T	Y	N	S	T	Q	A	Q	Q	C	P	T	E	T	H	I	C	F	T	R	M	D	.	.	G	D	R
Query Conservation																																																																													.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																																																	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	L	A	G	K	T	S	G	A	H	G	P	R	E	H	H	N	H	I	F	T	W	G	A	G	D	K	A	A	T	D	A	V	F	A	N	A	P	V	T	V	S	Q	H	M	Y	Y	P	R	V	H	P	C	P	L	E	T	C	G	C	V	A	S	F	D	P	I	K	G	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	G	T	T					T	T				S	S	T	T																					S												B					S	S										T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.		.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		L	V	I	H	A	S	T	Q	V	P	W	H	L	R	R	Q	V	A	R	L	V	G	M	K	Q	H	K	V	H	V	I	K	E	R	V	G	G	G	F	G	S	K	Q	D	I	L	L	E	E	V	C	A	.	W	A	T	C	V	T	G	R	P	V	L	F	R	Y	T	R	E	E	E	F	I	A	N	T	S	R	H
Query Conservation																																																						.
Alig confidence																																																						.
Template Conservation
Template Sequence		L	T	T	Y	I	T	S	Q	A	P	H	V	V	R	T	V	V	S	M	L	S	G	I	P	E	S	K	V	R	I	V	S	P	D	I	G	G	G	F	G	N	K	V	G	I	Y	P	G	Y	V	C	A	I	V	A	S	I	V	L	G	R	P	V	K	W	V	E	D	R	V	E	N	I	S	T	T	A	F	A	R
Template Known Secondary structure									S																	G	G	G									S			T	T	T	T	S	S																T	S															S
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.			530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		V	A	K	V	T	V	K	L	G	A	K	K	D	G	R	L	T	A	V	K	M	D	F	R	A	N	T	G	P	Y	G	N	H	S	L	T	V	P	C	N	G	P	A	L	.	.	S	L	P	L	Y	P	C	D	N	V	D	F	Q	V	T	T	Y	Y	S	N	I	C	P	N	G	A	Y	Q	G	Y	G	A	P	K
Query Conservation																																														.	.
Alig confidence																																														.	.
Template Conservation
Template Sequence		D	Y	H	M	D	G	E	L	A	A	T	P	D	G	K	I	L	G	L	R	V	N	V	V	A	D	H	G	A	F	D	A	C	A	D	P	T	K	F	P	A	G	L	F	H	I	C	S	G	S	Y	D	I	P	R	A	H	C	S	V	K	G	V	Y	T	N	K	A	P	G	G	V	A	Y	S	F	R	V	T	E
Template Known Secondary structure													T	T																S	S							T	T		T	T	T	T	G	G	G	T	T	T	T	B			S												S	S					S					S
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		564	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	F	A	I	T	M	A	L	A	E	L	A	E	Q	L	Q	I	D	Q	L	E	I	I	E	R	N	R	V	H	E	G	Q	E	L	K	I	L	G	A	I	G	E	G	K	A	P	T	S	V	P	S	A	A	S	C	A	L	E	E	I	L	R	Q	G	R	E	M	I	Q	W	S	S	P	K	P	Q	N	G	D
Query Conservation
Alig confidence																																			.
Template Conservation																																			.
Template Sequence		A	V	Y	L	I	E	R	M	V	D	V	L	A	Q	K	L	N	M	D	K	A	E	I	R	A	K	N	F	I	R	K	E	Q	.	F	P	Y	T	T	Q	F	G	F	E	Y	D	S	G	D	Y	H	T	A	L	K	K	V	L	D	A	V	D	Y	P	A	L	R	A	E	Q	A	A	R	R	A	D	P	N	S	P
Template Known Secondary structure																		T			T	T							B			G	G	G	.		S				T	T	S																				T															T	T		S
Template Predicted Secondary structure																																			.
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
		644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.										.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.
Query Sequence		W	H	I	G	R	G	V	A	I	I	M	Q	K	S	G	I	P	D	.	.	.	.	.	.	.	.	.	I	D	Q	A	N	C	M	I	K	L	E	S	D	G	T	F	I	V	H	S	G	G	A	D	I	G	T	G	L	D	T	V	V	T	K	L	A	A	E	V	L	H	C	P	P	Q	D	V	H	V	I	S	G
Query Conservation																				.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	M	G	I	G	L	V	T	F	T	E	V	V	G	A	G	P	S	K	M	C	D	I	L	G	V	G	M	F	D	S	C	E	I	R	I	H	P	T	G	S	A	I	A	R	M	G	T	I	T	Q	G	Q	G	H	Q	T	T	Y	A	Q	I	I	A	T	E	L	G	I	P	S	E	V	I	Q	V	E	E	G
Template Known Secondary structure															B					T	T	T				T	T			S										T	T	S							S				S	S	S															T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
		715	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.			.	780	.	.	.	.	.	.	.	.	.	790	.	.
Predicted Secondary structure																																																																		.	.
Query SS confidence																																																																		.	.
Query Sequence		D	T	D	H	A	L	F	D	K	G	A	Y	A	S	S	G	T	C	F	S	G	N	A	A	R	L	A	A	E	N	L	R	E	K	I	L	F	H	G	A	Q	M	L	G	E	P	V	A	D	V	Q	L	A	T	P	G	V	V	R	G	K	K	G	E	.	.	V	S	F	G	D	I	A	H	K	G	E	T	G	T
Query Conservation																																																																		.	.
Alig confidence																																																																		.	.
Template Conservation
Template Sequence		D	T	S	T	A	P	Y	G	L	G	T	Y	G	S	R	S	T	P	V	A	G	A	A	I	A	L	A	A	R	K	I	H	A	K	A	R	K	I	A	A	H	M	L	E	V	N	E	N	D	L	D	W	E	V	D	R	F	K	V	K	G	D	D	S	K	F	K	T	M	A	D	I	A	W	Q	A	Y	H	Q	P
Template Known Secondary structure		B	T	T	T	S						S		T	T																													T	T	S		G	G	G					S	S					S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
		793	.	.	.				.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		G	F	G	S	.	.	.	L	V	G	T	G	S	Y	I	T	P	D	F	A	F	P	Y	G	A	N	F	A	E	V	A	V	N	T	R	T	G	E	I	R	L	D	K	F	Y	A	L	L	D	C	G	T	P	V	N	P	E	L	A	L	G	Q	I	Y	G	A	T	L	R	A	I	G	H	S	M	S	E	E	I	I
Query Conservation						.	.	.
Alig confidence						.	.	.
Template Conservation
Template Sequence		P	A	G	L	E	P	G	L	E	A	V	H	Y	Y	D	P	P	N	F	T	Y	P	F	G	I	Y	L	C	V	V	D	I	D	R	A	T	G	E	T	K	V	R	R	F	Y	A	L	D	D	C	G	T	R	I	N	P	M	I	I	E	G	Q	I	H	G	G	L	T	E	G	Y	A	V	A	M	G	Q	Q	M	P
Template Known Secondary structure			T	T			S	S										S	S		B														T	T	T															B	S		S																						T
Template Predicted Secondary structure
Template SS confidence
		631	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710
		870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.				.	.	.	.	.	940	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.
Query SS confidence																																																																			.	.	.
Query Sequence		Y	D	A	E	G	H	P	L	T	R	D	L	R	S	Y	G	A	P	K	I	G	D	I	P	R	D	F	R	A	V	L	V	P	S	D	D	K	V	G	P	F	G	A	K	S	I	S	E	I	G	V	N	G	A	A	P	A	I	A	T	A	I	H	D	A	.	.	.	C	G	I	W	L	R	E	W	H	F	T	P
Query Conservation																																																																			.	.	.
Alig confidence																										.																																									.	.	.
Template Conservation																										.
Template Sequence		F	D	A	Q	G	N	L	L	G	N	T	L	M	D	Y	F	L	P	T	A	V	E	T	P	.	H	W	E	T	D	H	T	V	T	P	S	P	H	H	P	I	G	A	K	G	V	A	E	S	P	H	V	G	S	I	P	T	F	T	A	A	V	V	D	A	F	A	H	V	G	V	T	H	L	D	M	P	H	T	S
Template Known Secondary structure		B		T	T			B		S		S	T	T	T	S					T	T	T	S		.												T	T	S	T	T		B				T	T																			G	G	G	T						S
Template Predicted Secondary structure																										.
Template SS confidence
		711	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.		.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.
		947	.	.	950	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	I	L	T	A	L	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	R	V	W	K	S	L	K	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		790	.	.	.	.	.	.	.	.