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Job DescriptionQ46814
Confidence100.00%DateThu Jan 5 12:34:41 GMT 2012
Rank3Aligned Residues884
% Identity27%Templatec1dgjA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: crystal structure of the aldehyde oxidoreductase from2 desulfovibrio desulfuricans atcc 27774
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1... .....10.........20........ .30.........40.........50.........60..... ....70.......
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Query Sequence  MIIH. FTLNGAPQELTVNPGENVQKLLFN. MGMHSVRNSDDGFGFAGSDAIIFNGNIVNASLLIAAQ. LEKADIRTAESL
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Template Sequence  METKTLIVNGMARRLLVSPNDLLVDVLRSQLQLTSVKVGC. GKGQCGACTVILDGKVVRACIIKMSRVAENASVTTLEGI
Template Known Secondary structure 

TTB


TT
BTT

TTS

SS.SSSSS
TTTTGGG
BGGGS
TT

GGGT
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   1........10.........20.........30.........40 .........50.........60.........70.........
 
   78.80.........90.........100.........110.........120.........130 .........140.........150.....
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Query Sequence  GKWNELSLVQQAMVDVGVVQSGYNDPAAALIITDLLDRIAAPTREEIDDALSG. . LFSRDAGWQQYYQVIELAVARKNNP
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Template Sequence  GAPDCLHPLQHAWIQHGAAQCGFCTPGFIVSAKALLDENVAPSREDVRDWFQKHHNICRCTGYKPLVDAVMDAAAILRGE
Template Known Secondary structure 
BTTB

T

SS
TT
SS

TT


SSS
STTS
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   80.........90.........100.........110.........120.........130.........140.........150.........
 
   156...160.........170.........180.........190....... ..200.........210.........220.........230..
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Query Sequence  QATIDIAPTFRDDLEVIGKHYPKTDAAKMVQAKPCYVEDRVT. . . ADACVIKMLRSPHAHALITHLDVSKAEALPGVVHV
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Template Sequence  KTVEEISFKMPADGRIWGSSIPRPSAVAKVTGLAEFGADAALRMPENTLHLALAQAKVSHALIKGIDTSEAEKMPGVYKV
Template Known Secondary structure  S
S



TT


TTS



TTT


BGGGS
TT

SSSS
STT
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   160.........170.........180.........190.........200.........210.........220.........230.........
 
   233......240.........250. ........260.........270.........280.........290.........300.........
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Query Sequence  ITHLNCPDIYYTPGGQSAP. . . EPSPLDRRMFGKKMRHVGDRVAAVVAESEEIALEALKLIDVEYEVLKPVMSIDEAMAE
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Template Sequence  LTHKDVKGKNRITGLITFPTNKGDGWERPILNDSKIFQYGDALAIVCADSEANARAAAEKVKFDLELLPEYMSAPEAMAP
Template Known Secondary structure 
GGG

S
S

SS

TT
SS
S

SS
SS
STT
SSTT





SST
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   240.........250.........260.........270.........280.........290.........300.........310.........
 
   310.........320.........330.........340.........350.........360.........370.... .....380.......
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Query Sequence  DAPVVHDEPVVYVAGAPDTLEDDNSHAAQRGEHMIINFPIGSRPRKNIAASIHGHIGDMDKGFAD. . ADVIIERTYNSTQ
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Template Sequence  DAIEIHPG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TPNVYYDQLEEKGEDTVPFFNDPANVVAEGSYYTQR
Template Known Secondary structure  T


SBTT....................................B
SSS
SS
TTS

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   320....... ..330.........340.........350.........360...
 
   388.390.........400..... ....410.........420.........430... ......440.........450.........460.....
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Query Sequence  AQQCPTETHICFTRMDGD. RLVIHASTQVPWHLRRQVARLVGMKQHK. VHVIKERVGGGFGSKQDILLEEVCAWATCVTG
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Template Sequence  QPHLPIEPDVGYGYINEQGQVVIHSKSVAIHLHALMIAPGLGLEFPKDLVLVQNTTGGTFGYKFSPTMEALVGVAVMATG
Template Known Secondary structure 




SS


TTS


S
T

TTTT
B
S

TTGGGS
SS
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   364.....370.........380.........390.........400.........410.........420.........430.........440...
 
   466...470.........480.........490.........500.........510.........520.........530.........540.....
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Query Sequence  RPVLFRYTREEEFIANTSRHVAKVTVKLGAKKDGRLTAVKMDFRANTGPYGNHSLTVPCNGPALSLPLYPCDNVDFQVTT
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Template Sequence  RPCHLRYNYEQQQNYTGKRSPFWTTMRYAADRQGKILAMETDWSVDHGPYSEFGDLLTLRGAQYIGAGYGIANIRGTGRT
Template Known Secondary structure  S


SS
B



TTS


S

TTTTTTB

S
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   444.....450.........460.........470.........480.........490.........500.........510.........520...
 
   546...550.........560.........570.........580.........590.........600.........610.........620.....
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Query Sequence  YYSNICPNGAYQGYGAPKGNFAITMALAELAEQLQIDQLEIIERNRVHEGQELKILGAIGEGKAPTSVPSAASCALEEIL
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Template Sequence  VATNHCWGAAFRGYGAPESEFPSEVLMDELAEKLGMDPFELRALNCYREGDTTSSGQIPEVM. . . . . . . . . . . . SLPEMF
Template Known Secondary structure 

SS

B


TTTTT

B

TT


TTS


S

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   524.....530.........540.........550.........560.........570.........580..... ....590.
 
   626...630....... ..640.........650.........660.........670.........680.........690.........700.
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Query Sequence  RQGREMIQWSSP. . . KPQNGDWHIGRGVAIIMQKSGIPDIDQANCMIKLESDGTFIVHSGGADIGTGLDTVVTKLAAEV.
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Template Sequence  DKMRPYYEESKKRVKERSTAEIKRGVGVALGVYGAGLDGPDTSEAWVELNDDGSVTLGNSWEDHGQGADAGSLGTAHEAL
Template Known Secondary structure  TT

SSSSSSS

TTS




SSS
T
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   592.......600.........610.........620.........630.........640.........650.........660.........670.
 
   702.......710.........720.........730.........740.........750.........760.........770.........
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Query Sequence  . . LHCPPQDVHVISGDTDHALFDKGAYASSGTCFSGNAARLAAENLREKILFHGAQMLGEPVADVQLATPGVVRGKKGEV
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Template Sequence  RPLGITPENIHLVMNDTSKTPNSGPAGGSRSQVVTGNAIRVACEMLIEGMRKPGGGFFTPAEMKAEGRPMRYDGKWTAPA
Template Known Secondary structure  GGGT

GGGSBTTTS




S
TT
TTTTB
SSSSB

TT



S
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   672.......680.........690.........700.........710.........720.........730.........740.........750.
 
   780.........790.........800.........810.........820.........830.........840.........850.........
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Query Sequence  SFGDIAHKGETGTGFGSLVGTGSYITPDFAFPYGANFAEVAVNTRTGEIRLDKFYALLDCGTPVNPELALGQIYGATLRA
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Template Sequence  . . . . . . . . . . . . . . . . KDCDAKGQGSPFACYMYGLFLTEVAVEVATGKATVEKMVCVADIGKICNKLVVDGQIYGGLAQG
Template Known Secondary structure  ................B


TTS
SB

STTTT
BS
S
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   752.......760.........770.........780.........790.........800.........810.....
 
   860.........870.........880.........890.........900.........910.........920.........930.........
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Query Sequence  IGHSMSEEIIYDAEGHPLTRDLRSYGAPKIGDIPRDFRAVLVPSDDKVGPFGAKSISEIGVNGAAPAIATAIHDACGIWL
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Template Sequence  VGLALSEDY. . . . EDLKKHSTMGGAGIPSIKMIPDDIEIVYVETPRKDGPFGASGVGEMPLTAPHAAIINGIYNACGARV
Template Known Secondary structure  T


....
STTTTSSTTTTT


GGGS
S





TTSGGGB


TTGGGSSS


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   816...820.... .....830.........840.........850.........860.........870.........880.........890.
 
   940.........950...
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Query Sequence  REWHFTPEKILTAL
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Template Sequence  RHLPARPEKVLEAM
Template Known Secondary structure 
BS


T
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   892.......900.....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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