 |
Job Description | P60422 | Confidence | 17.28% | Date | Thu Jan 5 12:06:47 GMT 2012 |
Rank | 38 | Aligned Residues | 36 |
% Identity | 17% | Template | c3u5cI_ |
PDB info |
PDB header:ribosome | Chain: I: PDB Molecule:40s ribosomal protein s8-a; |
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution
|
Resolution | 3.00 Å |
|
  |   |
50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | |
|
|
|
|
. | . | 80 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  | . | . | . | . | . |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
Query Sequence |   |
T | T | R | H | I | G | G | G | H | K | Q | A | Y | R | I | V | D | F | K | R | N | K | D | G | I | P | A | V | . |
. |
. |
. |
. |
V | E | R | L | E | Y | D | P |
Query Conservation |   |
|
|
|
|
|
|
|
|   |
|
|   |
|
|   |
|
|
|   |
|   |   |   |   |
|   |   |   | . | . | . | . | . |
|   |   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|
|
|
|   |
|   |
|
|
|
|   |   |   |   |
|
|   |   |   |
|   |   |   |
|
|
|   |
|
|
|   |
|
|   |
|   |
Template Sequence |   |
S | V | R | T | R | G | G | N | K | K | Y | R | A | L | R | I | E | T | G | N | F | S | W | A | S | E | G | I | S | K | K | T | R | I | A | G | V | V | Y | H | P |
Template Known Secondary structure |   |
 |  |  |
| S | S | S |
|  |  |  |  |  | S | S | B |
|  |  |  |  |  |  | G | G | G | T |  |  |  |  |  |  |
|
|  |  |  |  |
| S |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
45 | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|