Job Description P60422 Confidence 100.00% Date Thu Jan 5 12:06:47 GMT 2012 Rank 2 Aligned Residues 267 % Identity 59% Template c3d5bD_ PDB info PDB header:ribosome Chain: D: PDB Molecule:50s ribosomal protein l2; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400. Resolution 3.21 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		A	V	V	K	C	K	P	T	S	P	G	R	R	H	V	V	K	V	V	N	P	E	L	H	K	G	K	P	F	A	P	L	L	E	K	N	S	K	S	G	G	R	N	N	N	G	R	I	T	T	R	H	I	G	G	G	H	K	Q	A	Y	R	I	V	D	F	K	R	N	K	D	.	G	I	P	A	V	V	E	R
Query Conservation																																																																									.
Alig confidence																																																																									.
Template Conservation
Template Sequence		A	V	K	K	F	K	P	Y	T	P	S	R	R	F	M	T	V	A	D	F	S	E	I	T	K	T	E	P	E	K	S	L	V	K	P	L	K	K	T	G	G	R	N	N	Q	G	R	I	T	V	R	F	R	G	G	G	H	K	R	L	Y	R	I	I	D	F	K	R	W	D	K	V	G	I	P	A	K	V	A	A
Template Known Secondary structure									S	S	S	S	S	S	S						G	G	G	S		S			S				S	S	S							S	S		S	S	S	S		S	S	S	S	B													S	S	T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	Y	D	P	N	R	S	A	N	I	A	L	V	L	Y	K	D	G	E	R	R	Y	I	L	A	P	K	G	L	K	A	G	D	Q	I	Q	S	G	V	D	A	A	I	K	P	G	N	T	L	P	M	R	N	I	P	V	G	S	T	V	H	N	V	E	M	K	P	G	K	G	G	Q	L	A	R	S	A	G	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	Y	D	P	N	R	S	A	R	I	A	L	L	H	Y	V	D	G	E	K	R	Y	I	I	A	P	D	G	L	Q	V	G	Q	Q	V	V	A	G	P	D	A	P	I	Q	V	G	N	A	L	P	L	R	F	I	P	V	G	T	V	V	H	A	V	E	L	E	P	K	K	G	A	K	L	A	R	A	A	G	T
Template Known Secondary structure						T	T	S	S	S								T	T	T										T			T	T					B	S	T	T	S				T	T					G	G	G	S		T	T								S	S	T	T	T							S	T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		Y	V	Q	I	V	A	R	D	G	A	Y	V	T	L	R	L	R	S	G	E	M	R	K	V	E	A	D	C	R	A	T	L	G	E	V	G	N	A	E	H	M	L	R	V	L	G	K	A	G	A	A	R	W	R	G	V	R	P	T	V	R	G	T	A	M	N	P	V	D	H	P	H	G	G	G	E	G	R	N	.
Query Conservation																																																																																	.
Alig confidence																																																																																	.
Template Conservation
Template Sequence		S	A	Q	I	Q	G	R	E	G	D	Y	V	I	L	R	L	P	S	G	E	L	R	K	V	H	G	E	C	Y	A	T	V	G	A	V	G	N	A	D	H	K	N	I	V	L	G	K	A	G	R	S	R	W	L	G	R	R	P	H	V	R	G	A	A	M	N	P	V	D	H	P	H	G	G	G	E	G	R	A	P
Template Known Secondary structure										T	T							T	T	S							T	T						S			S			G	G	G	G					S	T						T	T	B						S	T	T	S		G	G	G		S	S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		F	G	K	H	P	V	T	P	W	G	V	Q	T	K	G	K	K	T	R	S	N	K	R	.	T	D	K	F	I	V
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		R	G	R	P	P	A	S	P	W	G	W	Q	T	K	G	L	K	T	R	K	R	R	K	P	S	S	R	F	I	I
Template Known Secondary structure			S	S	S		B		T	T	S		B		S	S				S		T	T		G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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