Job Description P60422 Confidence 100.00% Date Thu Jan 5 12:06:47 GMT 2012 Rank 3 Aligned Residues 262 % Identity 48% Template c3bboE_ PDB info PDB header:ribosome Chain: E: PDB Molecule:ribosomal protein l2; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome Resolution 9.40 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		V	K	C	K	P	T	S	P	G	R	R	H	V	V	K	V	V	N	P	E	L	H	K	G	K	P	F	A	P	L	L	E	K	N	S	K	S	.	G	G	R	N	N	N	G	R	I	T	T	R	H	I	G	G	G	H	K	Q	A	Y	R	I	V	D	F	K	R	N	K	D	G	I	P	A	V	V	E	R	L	E
Query Conservation																																							.
Alig confidence																	.	.	.	.	.																		.
Template Conservation																	.	.	.	.	.
Template Sequence		H	L	Y	K	T	S	T	S	S	T	R	N	G	A	V	.	.	.	.	.	Q	V	K	S	N	P	R	N	N	L	I	S	G	Q	R	R	C	G	K	G	R	N	A	R	G	I	I	T	A	R	H	R	G	G	G	H	K	R	L	Y	R	K	I	D	F	R	R	N	E	K	D	I	Y	G	K	I	V	T	I	E
Template Known Secondary structure				S	S	S							S	S	S	S	.	.	.	.	.												S								S		S			S	S				S						S										S					S
Template Predicted Secondary structure																	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.						.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	P	N	R	S	A	N	I	A	L	V	L	Y	K	D	G	E	R	R	Y	I	L	A	P	K	G	L	K	A	G	D	Q	I	Q	S	G	V	D	A	A	I	K	P	G	N	T	L	P	M	R	N	I	P	V	G	S	T	V	H	N	V	E	M	K	P	G	K	G	G	Q	L	A	R	S	A	G	T	Y	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	D	P	N	R	N	A	Y	I	C	L	I	H	Y	G	D	G	E	K	R	Y	I	L	H	P	R	G	A	I	I	G	D	T	I	V	S	G	T	E	V	P	I	K	M	G	N	A	L	P	L	T	D	M	P	L	G	T	A	I	H	N	I	E	I	T	L	G	R	G	G	Q	L	A	R	A	A	G	A	V	A
Template Known Secondary structure				S	S	S		S								S	S										S	S		S	S							S	S	S				S	S		S				G	G	G		S	S		S	S						S	S	S	S				S	S			T	T	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		Q	I	V	A	R	D	G	A	Y	V	T	L	R	L	R	S	G	E	M	R	K	V	E	A	D	C	R	A	T	L	G	E	V	G	N	A	E	H	M	L	R	V	L	G	K	A	G	A	A	R	W	R	G	V	R	P	T	V	R	G	T	A	M	N	P	V	D	H	P	H	G	G	G	E	.	G	R	N	F	G
Query Conservation																																																																												.
Alig confidence																																																																												.
Template Conservation
Template Sequence		K	L	I	A	K	E	G	K	S	A	T	L	K	L	P	S	G	E	V	R	L	I	S	K	N	C	S	A	T	V	G	Q	V	G	N	V	G	V	N	Q	K	R	L	G	R	A	G	S	K	R	W	L	G	K	R	P	V	V	R	G	V	V	M	N	P	V	D	H	P	H	G	G	G	E	G	R	A	P	I	G
Template Known Secondary structure		B			S	S		S	T	T				B		S	T	T		B					S	S					S						S					S				S	S	S	S	S	S	T	T	T		S		S						S		T	T	T	S	S	S			S	S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		242	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure					.																.
Query SS confidence					.																.
Query Sequence		K	H	P	.	V	T	P	W	G	V	Q	T	K	G	K	K	T	R	S	.	N	K	R	T	D	K	F	I	V	R	R
Query Conservation					.																.
Alig confidence					.																.
Template Conservation
Template Sequence		R	K	S	P	T	T	P	W	G	Y	P	A	L	G	R	R	S	R	K	R	N	K	Y	S	D	N	F	I	I	R	R
Template Known Secondary structure		S	S			S	S	S				S								S	S	S					B
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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