Job Description P60422 Confidence 100.00% Date Thu Jan 5 12:06:47 GMT 2012 Rank 7 Aligned Residues 225 % Identity 40% Template c1kqsA_ PDB info PDB header:ribosome Chain: A: PDB Molecule:ribosomal protein l2; PDBTitle: the haloarcula marismortui 50s complexed with a2 pretranslocational intermediate in protein synthesis Resolution 3.10 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		K	N	S	K	S	G	G	R	N	N	N	G	R	I	T	T	R	H	I	G	G	G	H	K	Q	A	Y	R	I	V	D	F	K	R	N	.	K	D	G	I	P	A	V	V	E	R	L	E	Y	D	P	N	R	S	A	N	I	A	L	V	L	Y	K	D	G	E	R	R	Y	I	L	A	P	K	G	L	K	A	G	D
Query Conservation																																					.
Alig confidence											.	.																									.
Template Conservation											.	.
Template Sequence		G	R	R	I	Q	G	Q	R	R	.	.	G	R	G	T	S	T	F	R	A	P	S	H	R	Y	K	A	D	L	E	H	R	K	V	E	D	G	D	V	I	A	G	T	V	V	D	I	E	H	D	P	A	R	S	A	P	V	A	A	V	E	F	E	D	G	D	R	R	L	I	L	A	P	E	G	V	G	V	G	D
Template Known Secondary structure											.	.		T			G	G	G	S			G	G	G												S	S	S													T	T	T	T									T	T	S								B	T	T			T	T
Template Predicted Secondary structure											.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.			10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	Q	S	G	V	D	A	A	I	K	P	G	N	T	L	P	M	R	N	I	P	V	G	S	T	V	H	N	V	E	M	K	P	G	K	G	G	Q	L	A	R	S	A	G	T	Y	V	Q	I	V	A	R	D	G	A	Y	V	T	L	R	L	R	S	G	E	M	R	K	V	E	A	D	C	R	A	T	L	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	Q	V	G	V	D	A	E	I	A	P	G	N	T	L	P	L	A	E	I	P	E	G	V	P	V	C	N	V	E	S	S	P	G	D	G	G	K	F	A	R	A	S	G	V	N	A	Q	L	L	T	H	D	R	N	V	A	V	V	K	L	P	S	G	E	M	K	R	L	D	P	Q	C	R	A	T	I	G	V
Template Known Secondary structure					B	S	T	T			S	S	T	T					G	G	G	S		T	T					S	B		S	S	T	T	S				B	S		S	T	T										S	S							T	T	S							T	T						S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.						.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.				.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																									.	.	.	.	.																							.										.	.	.
Query SS confidence																									.	.	.	.	.																							.										.	.	.
Query Sequence		V	G	N	A	E	H	M	L	R	V	L	G	K	A	G	A	A	R	W	R	G	V	R	.	.	.	.	.	P	T	V	R	G	T	A	M	N	P	V	D	H	P	H	G	G	G	E	G	R	N	.	F	G	K	H	P	V	T	P	W	.	.	.	G	V	Q	T	K	G	K	K	T	R	S	N	K	R
Query Conservation																									.	.	.	.	.																							.										.	.	.
Alig confidence																									.	.	.	.	.																							.										.	.	.
Template Conservation
Template Sequence		V	G	G	G	G	R	T	D	K	P	F	V	K	A	G	N	K	H	H	K	M	K	A	R	G	T	K	W	P	N	V	R	G	V	A	M	N	A	V	D	H	P	F	G	G	G	G	R	Q	H	P	G	K	P	K	S	I	S	R	N	A	P	P	G	R	K	V	G	D	I	A	S	K	R	T	G	R
Template Known Secondary structure		B	S	S	T	T	G	G	G	S				S									T	T	S	S				S				G	G	G	S		T	T	T		T	T			S	S	S	S			S	S		S				T	T			T	T	T			S			T		S			S	S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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