Return to main results Retrieve Phyre Job Id

Job DescriptionP11988
Confidence100.00%DateThu Jan 5 11:33:02 GMT 2012
Rank36Aligned Residues304
% Identity19%Templated1v6ya_
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases beta-glycanases
Resolution2.20

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70.........80...
Predicted Secondary structure 


















































Query SS confidence 















































































Query Sequence  FPETFLWGGATAANQVEGAWQEDGKGISTSDLQPHGVMGKMEPRILGKENIKDVAIDFYHRYPEDIALFAEMGFTCLRIS
Query Conservation 

  
 

 



 




   

   
 

                       
 
 
 

 


 

  

   



Alig confidence 

















.........................................









..








Template Conservation        

 
        .........................................          ..

     
 
Template Sequence  AQSGRYFGTAIASGKLGD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SAYTTIASRE. . FNMVTAENE
Template Known Secondary structure  TTT

GGGTT
...........................................
SSST
Template Predicted Secondary structure 






...........................................





Template SS confidence 















































































   10.........20....... ..30....... ..40......
 
   84.....90.........100.........110.........120 .........130.........140.........150.........160.
Predicted Secondary structure 















..












Query SS confidence 




































. .








































Query Sequence  IAWARIFPQGDEVEPNEAGLAFYDRLFDEMAQAGIKP. . LVTLSHYEMPYGLVKNYGGWANRAVIDHFEHYARTVFTRYQ
Query Conservation 





 
 
     
  

  
  


 
   

 
..



 
 
 
  
    


     
  
  

      

Alig confidence 














.....
















..












....























Template Conservation    
   

  
    .....   
  
      

 
           
 
 ....               
  
  

 
Template Sequence  MKIDATEPQRGQFNF. . . . . SAGDRVYNWAVQNGKQVRGHTLAWHSQQPGWM. . . . QSLSGSTLRQAMIDHINGVMGHYK
Template Known Secondary structure  TS
SBTTB


.....TT
SSS

....

T
Template Predicted Secondary structure 









.....









....



Template SS confidence 















































































   47..50.........60. ........70.........80.........90... ......100.........110.......
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
Predicted Secondary structure 





























Query SS confidence 















































































Query Sequence  HKVALWLTFNEINMSLHAPFTGVGLAEESGEAEVYQAIHHQLVASARAVKACHSLLPEAKIGNMLLGGLVYPLTCQPQDM
Query Conservation 


  
 
 


                             
 

  
    
       


        
      
 
Alig confidence 































...........




















................
Template Conservation 
 
  


 


                    ...........    
   

  

 
     ................
Template Sequence  GKIAQWDVVNEAFSDDGSGGRRDSNLQRTGND. . . . . . . . . . . WIEVAFRTARAADPAAKLCYN. . . . . . . . . . . . . . . .
Template Known Secondary structure  TT



B
SSSS

B


TTGGG
TT...........
TTS................
Template Predicted Secondary structure 




















...........




................
Template SS confidence 















































































   118.120.........130.........140......... 150.........160.........170
 
   242.......250.........260.........270.........280.........290.........300.........310.........320.
Predicted Secondary structure 













































Query SS confidence 















































































Query Sequence  LQAMEENRRWMFFGDVQARGQYPGYMQRFFRDHNITIEMTESDAEDLKHTVDFISFSYYMTGCVSHDESINKNAQGNILN
Query Conservation   

           
 
  
 

                
  
    
 
 








   
                
Alig confidence  ..............

















........


















.....................
Template Conservation  ..............                  ........       
   
 

    .....................
Template Sequence  . . . . . . . . . . . . . . DYNIENWTWAKTQGVYNM. . . . . . . . VRDFKQRGVPIDCVGFQSH. . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ..............SS
SSTTS........T





.....................
Template Predicted Secondary structure  ..............







........





.....................
Template SS confidence 















































































   171........180........ .190.........200.......
 
   322.......330.........340.........350.........360.........370.........380.........390.........400.
Predicted Secondary structure 






































Query SS confidence 















































































Query Sequence  MIPNPHLKSSEWGWQIDPVGLRVLLNTLWDRYQKPLFIVENGLGAKDSVEADGSIQDDYRIAYLNDHLVQVNEAIADGVD
Query Conservation           
  

 
 
 

   
      
  

 




    
     
 
 
  
  

   
  
  

 


 
Alig confidence  ...........
















.



















.......























Template Conservation  ...........             
   .     

 


 
       .......       

               
Template Sequence  . . . . . . . . . . . LIVGQVPGDFRQNLQRF. ADLGVDVRITELDIRMRTPS. . . . . . . DATKLATQAADYKKVVQACMQVTR
Template Known Secondary structure  ...........TT


TT.TTT
SS
.......
T
TT
Template Predicted Secondary structure  ...........





.











.......




Template SS confidence 















































































   208.210.........220.... .....230.........240.... .....250.........260........
 
   402.......410...... ...420.........430.........440.........450.........
Predicted Secondary structure 




...





















Query SS confidence 














. . .










































Query Sequence  IMGYTSWGPIDLVSA. . . SHSQMSKRYGFIYVDRDDNGEGSLTRTRKKSFGWYAEVIKTRG
Query Conservation 
 

  


 

 

...  
 
  



  

       
  
 

 
   
  
     
Alig confidence 














...


.












..........















Template Conservation 
 
   
   
   
      .     

 
 
  ..........




 
    
    
Template Sequence  CQGVTVWGITDKYSWVPDVFP. GEGAALVWDASYA. . . . . . . . . . KKPAYAAVMEAFGSRS
Template Known Secondary structure  S
SBGGG
SST.T

SSB
TTS
..........B



Template Predicted Secondary structure 














.










..........





Template SS confidence 




























































   269270.........280......... 290.........300.. .......310........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions