Job Description P11988 Confidence 100.00% Date Thu Jan 5 11:33:02 GMT 2012 Rank 38 Aligned Residues 341 % Identity 17% Template d1kwga2 SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Resolution 1.60

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		Y	H	R	Y	P	E	D	I	A	L	F	A	E	M	G	F	T	C	L	R	I	S	I	.	A	W	A	R	I	F	P	Q	G	D	E	V	E	P	N	E	A	G	L	A	F	Y	D	R	L	F	D	E	M	A	Q	A	G	I	K	P	L	V	T	L	S	H	Y	E	M	P	Y	G	L	V	K	N	Y	G	G	W
Query Conservation																									.
Alig confidence																									.															.	.	.	.	.
Template Conservation																																								.	.	.	.	.
Template Sequence		K	E	R	W	K	E	D	A	R	R	M	R	E	A	G	L	S	H	V	R	I	G	E	F	A	W	A	L	L	E	P	E	P	G	R	L	E	W	.	.	.	.	.	G	W	L	D	E	A	I	A	T	L	A	A	E	G	L	K	V	V	L	G	T	P	T	A	T	P	P	K	W	L	V	D	R	Y	P	E	I
Template Known Secondary structure																T								T	T							S	B	T	T	B				.	.	.	.	.												T	T	T								S	T	T	S										G	G	G
Template Predicted Secondary structure																																								.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50						.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
																						141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	R	A	V	I	D	H	F	E	H	Y	A	R	T	V	F	T	R	Y	Q	H	K	V	A	L	W	.	.	L	T	F	N	E	I	N	M	S	L	H	A	P	F	T	G	V	G	L	A	E	E	S	G	E	A	E	V	Y	Q	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.								.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.
Template Sequence		L	P	V	D	R	E	G	R	R	R	R	F	G	G	R	R	H	Y	C	F	S	S	P	V	Y	R	E	E	A	R	R	I	V	T	L	L	A	E	R	Y	G	G	L	E	A	V	A	G	F	Q	T	D	N	E	Y	G	.	.	.	.	.	.	.	.	C	H	D	T	V	R	C	Y	C	P	R	C	Q	E	A	F
Template Known Secondary structure		S		B		T	T	S		B			S	S	S	S					T	T																				T	T		T	T							S	S	S	T	T	.	.	.	.	.	.	.	.	T	T	T	T	S				S
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.									.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		I	H	H	Q	L	V	A	S	A	R	A	V	K	A	C	H	S	L	L	P	E	A	K	I	G	N	M	L	L	G	G	L	V	Y	P	L	T	C	Q	P	Q	D	M	L	Q	A	M	E	E	N	R	R	W	M	F	F	G	D	V	Q	A	R	G	Q	Y	P	G	Y	M	Q	R	F	F	R	D	H	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																																																										.	.	.																		.	.	.	.
Template Conservation																																																										.	.	.
Template Sequence		R	G	W	L	E	A	R	Y	G	T	I	E	A	L	N	E	A	W	G	T	A	F	W	S	Q	R	Y	R	S	F	A	E	V	E	L	P	H	L	T	V	A	E	P	N	P	S	H	L	L	D	Y	Y	R	F	A	S	.	.	.	D	Q	V	R	A	F	N	R	L	Q	V	E	I	L	R	A	H	A	P	G	K
Template Known Secondary structure										S	S									T	T	T	G	G	G				S	S	G	G	G				S		S		S	S																.	.	.																		S	T	T
Template Predicted Secondary structure																																																										.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.				.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
						275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	N	I	T	I	E	M	T	E	S	D	A	E	D	L	K	H	T	V	D	F	I	S	F	S	Y	Y	M	T	G	C	V	S	H	D	E	S	I	N	K	N	A	Q	G	N	I	L	N	M	I	P	N	P	H	L	K	S	S	E	W	G	W	Q	I	D	P	V	G	L	R	V	L	L	N	T	L	W
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	V	T	H	N	F	M	G	F	F	T	D	L	D	A	F	A	L	A	Q	D	L	D	F	A	S	W	D	S	Y	P	L	G	F	T	D	L	M	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	P	E	E	K	L	R	Y	A	R	T	G	H	P	D	V	A	A	F	H	H	D	L	Y	R
Template Known Secondary structure									T	T			S	S						G	G	G	S	S	S														S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	T	T			T	T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.																.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.		.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		D	R	Y	Q	K	P	L	F	I	V	E	N	G	L	G	A	K	D	S	V	E	A	D	G	S	I	Q	D	D	Y	R	I	A	Y	L	N	D	H	L	V	Q	V	N	E	A	I	A	D	G	V	D	I	M	G	Y	T	S	W	.	G	P	I	D	L	V	S	A	S	H	S	Q	M	S	K	R	Y	G	F	I	Y
Query Conservation																																																												.
Alig confidence																						.	.	.	.	.	.	.																																.										.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.																																										.	.	.	.	.	.
Template Sequence		G	V	G	R	G	R	F	W	V	M	E	Q	Q	P	G	P	V	N	W	A	.	.	.	.	.	.	.	P	H	N	P	S	P	A	P	G	M	V	R	L	W	T	W	E	A	L	A	H	G	A	E	V	V	S	Y	F	R	W	R	Q	A	P	F	A	Q	E	Q	M	.	.	.	.	.	.	H	A	G	L	H	R
Template Known Secondary structure				T	T	T										S			S	S	S	.	.	.	.	.	.	.	S	S						T	T												T	T		S							S	B			S	S	S	T	T	T	T	.	.	.	.	.	.	S			S	B
Template Predicted Secondary structure																						.	.	.	.	.	.	.																																										.	.	.	.	.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.								.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.							.	.	.	.	.	.
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	R	D	D	N	G	E	G	S	L	T	R	T	R	K	K	S	F	G	W	Y	A	E	V	I	K
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.
Template Sequence		P	D	S	A	.	.	.	.	.	.	.	.	.	.	P	D	Q	G	F	F	E	A	K	R	V	A	E
Template Known Secondary structure		T	T	S		.	.	.	.	.	.	.	.	.	.	B
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		369	370	.	.											.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions