Job Description P11988 Confidence 87.53% Date Thu Jan 5 11:33:02 GMT 2012 Rank 208 Aligned Residues 109 % Identity 14% Template d1gvia3 SCOP info TIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain Resolution 3.3

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.														.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	R	I	L	G	K	E	N	I	K	D	V	A	I	D	F	Y	H	R	Y	P	E	D	I	A	L	F	A	E	M	G	F	T	C	L	R	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	W	A	R	I	F	P	Q	G	D	E	V	E	P	N	E	A	G	L	A	F	Y	D	R	L	F	D	E
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.
Template Sequence		P	W	G	S	E	D	P	T	P	T	S	F	F	G	G	D	L	Q	G	I	I	D	H	L	D	Y	L	A	D	L	G	I	T	G	I	Y	L	T	P	I	F	R	A	P	S	N	H	K	Y	D	T	A	D	Y	F	E	I	D	P	H	F	G	D	.	.	.	.	.	.	.	K	E	T	L	K	T	L	V	K	R
Template Known Secondary structure					S	S				S	S													T								T										B	S		S	S	S	S	T	T	S		S		T	T	S	B		T	T	T			.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.								.	.	.	.	.	.	.	.	230	.
		113	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.																																								.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure															.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	Q	A	G	I	K	P	L	V	T	L	S	.	.	H	Y	E	M	P	Y	G	L	V	K	N	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	W	A	N	R	A	V	I	D	H	F	E	H
Query Conservation															.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	H	E	K	G	I	R	V	M	L	D	A	V	F	N	H	C	G	Y	E	F	A	P	F	Q	D	V	L	K	N	G	A	A	S	R	Y	K	D	W	F	H	I	R	E	F	P	L	Q	T	E	P	R	P	N	Y	D	T	F	A	F	V	P	H	M	P	K	L	N	T	A	H	P	E	V	K	R	Y	L	L	D
Template Known Secondary structure						T										S	B			T	T											G	G	G		T	T	G	G	G	B		B	S	S	S	S				S	S	S		S	B		B	S	S	S		T	T	S	B	B	B		T	T	S
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		152	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	R	T	V	F	T	R	Y	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	T	Y	W	I	R	E	F	D
Template Known Secondary structure										S
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions