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Job DescriptionP11988
Confidence100.00%DateThu Jan 5 11:33:02 GMT 2012
Rank11Aligned Residues441
% Identity35%Templated1gnxa_
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Family 1 of glycosyl hydrolase
Resolution1.68

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  AFPETFLWGGATAANQVEGAWQEDGKGISTSDLQPHGVMGKMEPRILGKENIKDVAIDFYHRYPEDIALFAEMGFTCLRI
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Template Sequence  TFPEGFLWGSATASYQIEGAAAEDGRTPSIWDTYAR. . . . . . TPGRVRNGDTGDVATDHYHRWREDVALMAELGLGAYRF
Template Known Secondary structure 

TT





TTSTT


BT......STTSSGGG

SSSTT
TT
S
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   17..20.........30.........40.........50.. .......60.........70.........80.........90
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  SIAWARIFPQGDEVEPNEAGLAFYDRLFDEMAQAGIKPLVTLSHYEMPYGLVKNYGGWANRAVIDHFEHYARTVFTRYQH
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Template Sequence  SLAWPRIQPTG. RGPALQKGLDFYRRLADELLAKGIQPVATLYHWDLPQEL. ENAGGWPERATAERFAEYAAIAADALGD
Template Known Secondary structure 

SGGG.SSS

TT
SS

B.TT
TTSTTT
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   91........100. ........110.........120.........130.........140 .........150.........160........
 
   163......170.........180......... 190.........200.........210......... 220.........230.........240
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Query Sequence  KVALWLTFNEINMSLHAPFTGVGLAEE. SGEAEVYQAIHHQLVASARAVKACHSLLPE. AKIGNMLLGGLVYPLTCQPQD
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Template Sequence  RVKTWTTLNEPWCSAFLGYGSGVHAPGRTDPVAALRAAHHLNLGHGLAVQALRDRLPADAQCSVTLNIHHVRPLTDSDAD
Template Known Secondary structure  T


TS
SSTT



S
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SSS
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   169170.........180.........190.........200.........210.........220.........230.........240........
 
   241........250.. .......260.........270.........280.........290.........300.........310.........
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Query Sequence  MLQAMEENRRWM. FFGDVQARGQYPGYMQRFFRDHNITIEMTESDAEDLKHTVDFISFSYYMTGCVSHDESINKNAQGNI
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Template Sequence  ADAVRRIDALANRVFTGPMLQGAYPEDLVKDTAGLTDWSFVRDGDLRLAHQKLDFLGVNYYSPTLVSAHSPWPGADRVAF
Template Known Secondary structure  TSS

TTTT


TTS
TT



S

S





SSTT
TT

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   249250.........260.........270.........280.........290.........300.........310.........320........
 
   320.........330.........340.........350... ......360.........370.........380.........390........
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Query Sequence  LNMIPNPHLKSSEWGWQIDPVGLRVLLNTLWDRY. QKPLFIVENGLGAKDSVEADGSIQDDYRIAYLNDHLVQVNEAIAD
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Template Sequence  . . . . HQPPGETTAMGWAVDPSGLYELLRRLSSDFPALPLVITENGAAFHDYADPEGNVNDPERIAYVRDHLAAVHRAIKD
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SS
B
TT

B


TTS









TTS



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   345....350.........360.........370.........380.........390.........400.........410.........420
 
   399400.........410.........420.........430.........440.........450.........460.
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Query Sequence  GVDIMGYTSWGPIDLVSASHSQMSKRYGFIYVDRDDNGEGSLTRTRKKSFGWYAEVIKTRGLS
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Template Sequence  GSDVRGYFLWSLLDNFEWAHG. YSKRFGAVYVDYP. . . . . TGTRIPKASARWYAEVARTGVLP
Template Known Secondary structure  T


SB



GGGG.GG



STT.....TT


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   421........430.........440. ........450.... .....460.........470.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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