Phyre 2 alignment of P11988 with d1ceoa

Job Description P11988
Confidence 99.92% Date Thu Jan 5 11:33:02 GMT 2012

Rank 61 Aligned Residues 286

% Identity 16% Template d1ceoa_

SCOP info TIM beta/alpha-barrel (Trans)glycosidases beta-glycanases

Resolution 1.90

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	E	D	I	A	L	F	A	E	M	G	F	T	C	L	R	I	S	I	A	W	A	R	I	F	P	Q	G	D	E	V	E	P	N	E	A	G	L	A	F	Y	D	R	L	F	D	E	M	A	Q	A	G	I	K	P	L	V	T	L	S	H	Y	E	M	P	Y	G	L	V	K	N	Y	G	G	W	A	N	R	A	V
Query Conservation
Alig confidence																																																																		.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.
Template Sequence	E	K	D	I	E	T	I	A	E	A	G	F	D	H	V	R	L	P	F	D	Y	P	I	I	E	S	D	D	N	V	G	E	Y	K	E	D	G	L	S	Y	I	D	R	C	L	E	W	C	K	K	Y	N	L	G	L	V	L	D	M	H	H	A	P	G	S	.	.	.	.	.	.	.	T	L	F	E	D	P	N	Q
Template Known Secondary structure											T										G	G	G	T	B		S	S	S	T	T		B																		T	T														.	.	.	.	.	.	.		T	T	T
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.
Template SS confidence
	31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.								.	.	.	.	100	.	.	.

	146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.			.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence	I	D	H	F	E	H	Y	A	R	T	V	F	T	R	Y	Q	H	K	.	.	V	A	L	W	L	T	F	N	E	I	N	M	S	L	H	A	P	F	T	G	V	G	L	A	E	E	S	G	E	A	E	V	Y	Q	A	I	H	H	Q	L	V	A	S	A	R	A	V	K	A	C	H	S	L	L	P	E	A	K	I	G
Query Conservation																			.	.
Alig confidence																			.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	Q	K	R	F	V	D	I	W	R	F	L	A	K	R	Y	I	N	E	R	E	H	I	A	F	E	L	L	N	Q	V	V	E	P	D	S	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	N	K	L	M	L	E	C	I	K	A	I	R	E	I	D	S	T	M	W	L	Y
Template Known Secondary structure															T	T	T			S	S							S					S	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	S	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.																						.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170

	224	.	.	.	.			.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence	N	M	L	L	G	.	.	G	L	V	Y	P	L	T	C	Q	P	Q	D	M	L	Q	A	M	E	E	N	R	R	W	M	F	F	G	D	V	Q	A	R	G	Q	Y	P	G	Y	M	Q	R	F	F	R	D	H	N	I	T	I	E	M	T	E	S	D	A	E	D	L	K	H	T	V	D	F	I	S	F	S	Y	Y	M
Query Conservation						.	.
Alig confidence						.	.
Template Conservation
Template Sequence	I	G	G	N	N	Y	N	S	P	D	E	L	K	N	L	A	D	I	D	D	D	Y	I	V	Y	N	F	H	F	Y	N	P	F	F	F	T	H	Q	K	A	H	W	S	E	S	A	M	A	Y	N	R	T	V	K	Y	P	G	Q	Y	E	G	I	E	E	F	V	K	N	N	P	K	Y	S	F	M	M	E	L	N	N
Template Known Secondary structure									G	G	G	G	G	G	S						S	S										S					T	T	T		T	T													S	S					S									G	G	G	G	G	G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
	171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

	302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	G	C	V	S	H	D	E	S	I	N	K	N	A	Q	G	N	I	L	N	M	I	P	N	P	H	L	K	S	S	E	W	G	W	Q	I	D	P	V	G	L	R	V	L	L	N	T	L	W	D	R	Y	Q	K	P	L	F	I	V	E	N	G	L	G	A	K	D	S	V	E	A	D	G	S	I	Q	D	D	Y	R
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.																				.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.																				.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	L	N	K	E	L	L	R	K	D	L	K	P	A	I	E	F	R	.	E	K	K	K	C	K	L	Y	C	G	E	F	G	V	I	A	I	A	D	.	.	.	.	.	.	.	.	L	E	S	R
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S																.																T	T	S		.	.	.	.	.	.	.	.
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.																				.	.	.	.	.	.	.	.
Template SS confidence
																														251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.									.	290	.	.

	382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	A	Y	L	N	D	H	L	V	Q	V	N	E	A	I	A	D	G	V	D	I	M	G	Y	T	S	W	G	P	I	D	L	V	S	A	S	H	S	Q	M	S	K	R	Y	G	F	I	Y	V	D	R	D
Query Conservation
Alig confidence															.	.	.			.	.	.											.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.			.	.	.											.	.	.	.	.	.	.	.	.	.
Template Sequence	I	K	W	H	E	D	Y	I	S	L	L	E	E	Y	.	.	.	D	I	.	.	.	G	G	A	V	W	N	Y	K	K	M	.	.	.	.	.	.	.	.	.	.	D	F	E	I	Y	N	E	D	R	K
Template Known Secondary structure														T	.	.	.	T		.	.	.					S		S	B	S	T	.	.	.	.	.	.	.	.	.	.	T			S	B		T	T	S
Template Predicted Secondary structure															.	.	.			.	.	.											.	.	.	.	.	.	.	.	.	.
Template SS confidence
	293	.	.	.	.	.	.	300	.	.	.	.	.	.				.	.				.	310	.	.	.	.	.	.	.	.											.	320	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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