Return to main results Retrieve Phyre Job Id

Job DescriptionP11988
Confidence98.11%DateThu Jan 5 11:33:02 GMT 2012
Rank135Aligned Residues253
% Identity18%Templatec3mv14_
PDB info PDB header:hydrolaseChain: 4: PDB Molecule:beta-galactosidase; PDBTitle: e.coli (lacz) beta-galactosidase (r599a) in complex with guanidinium
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   63......70.........80.........90.........100.........110.........120..... ....130.........
Predicted Secondary structure 





















...






Query SS confidence 






























































. . .













Query Sequence  HRYPEDIALFAEMGFTCLRISIAWARIFPQGDEVEPNEAGLAFYDRLFDEMAQAGIKPLVTLS. . . HYEMPYGLVKNYGG
Query Conservation   

 


 

  

   









 
 
     
  

  
  


 
   

 




 ...
 
 
  
    

Alig confidence 





















.....



.............


















...










...
Template Conservation 
    

 


  
 
 

 

.....

  .............  






 

 
  

  
 

         ...
Template Sequence  QTMVQDILLMKQNNFNAVRCSH. . . . . YPNH. . . . . . . . . . . . . PLWYTLCDRYGLYVVDEANIETHGMVPMNRLTD. . .
Template Known Secondary structure  TT


TT.....S


.............T

S
B
TTSSSTTTTTT...
Template Predicted Secondary structure 





.....



.............


















...
Template SS confidence 















































































   370.........380.........390. .... ....400.........410.........420........
 
   140.........150.........160... ......170.........180.........190.........200.........210.......
Predicted Secondary structure 





..

















Query SS confidence 























. .





















































Query Sequence  WANRAVIDHFEHYARTVFTRYQHK. . VALWLTFNEINMSLHAPFTGVGLAEESGEAEVYQAIHHQLVASARAVKACHSLL
Query Conservation 
     
  
  

      



..
  
 
 


                             
 

  
    
   
Alig confidence  ..





















..














...........................











Template Conservation  .. 
            

 








 






  
  ...........................        
  
Template Sequence  . . DPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGAN. . . . . . . . . . . . . . . . . . . . . . . . . . . HDALYRWIKSVD
Template Known Secondary structure  ..
GGGTT
TT

SS



...........................
Template Predicted Secondary structure  ..












...........................
Template SS confidence 















































































   429430.........440.........450.........460....... ..470.........
 
   218.220.........230.........240.........250.........260.........270.........280.........290.......
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  PEAKIGNMLLGGLVYPLTCQPQDMLQAMEENRRWMFFGDVQARGQYPGYMQRFFRDHNITIEMTESDAEDLKHTVDFISF
Query Conservation      


        
      
  

           
 
  
 

                
  
    
 
 




Alig confidence 




.......










...................................................





Template Conservation 




....... 

        ................................................... 

 
 
Template Sequence  PSRPV. . . . . . . QYEGGGADTTA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TDIICP
Template Known Secondary structure  TTS
.......

TTTSSSTT...................................................
SSB

Template Predicted Secondary structure 


.......








...................................................
Template SS confidence 















































































   480.... .....490..... ....500.
 
   298.300.........310.........320.........330.........340.........350.... .....360.........370.....
Predicted Secondary structure 





































..















Query SS confidence 
























































. .




















Query Sequence  SYYMTGCVSHDESINKNAQGNILNMIPNPHLKSSEWGWQIDPVGLRVLLNTLWDRYQ. . KPLFIVENGLGAKDSVEADGS
Query Conservation 



   
                         
  

 
 
 

   
      
 .. 

 




    
     
 
Alig confidence 

















..............................








..

















...
Template Conservation 

                ..............................           

 
  

 




  
 ...
Template Sequence  MYARVDEDQPFPAVPKWS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IKKWLSLPGETRPLILCEYAHAMGNSLGG. . .
Template Known Secondary structure  BS

SS

B

SSS
B

..............................TSTT



S


SS

TT...
Template Predicted Secondary structure 










..............................

















...
Template SS confidence 















































































   502.......510......... 520.........530.........540........
 
   376...380.........390.........400.........410.........420.........430.... .....440......
Predicted Secondary structure 






















.........







Query SS confidence 


























































. . . . . . . . .











Query Sequence  IQDDYRIAYLNDHLVQVNEAIADGVDIMGYTSWGPIDLVSASHSQMSKRYGFIYVDRDD. . . . . . . . . NGEGSLTRTRKK
Query Conservation 
 
  
  

   
  
  

 


 
 

  


 

 

  
 
  



  

   .........    
  
 

 
Alig confidence  .............













































.........











Template Conservation  .............
  

          




   
         
     






 
 
  
   


  

 


Template Sequence  . . . . . . . . . . . . . FAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGDTPNDAQFCMNGLVFADRTPHP
Template Known Secondary structure  .............
TTS
SB



TT


TTTTS

S

GGGG


SB
TTS
B
T
Template Predicted Secondary structure  .............



























Template SS confidence 















































































   549550.........560.........570.........580.........590.........600.........610.....
 
   447..450.........460.........
Predicted Secondary structure 







Query SS confidence 






















Query Sequence  SFGWYAEVIKTRGLSLKKITIKA
Query Conservation 
   
  
               
Alig confidence 






















Template Conservation     
 
    

        
 
Template Sequence  ALTEAKHQQQFFQFRLSGQTIEV
Template Known Secondary structure  T
STT
Template Predicted Secondary structure 




Template SS confidence 






















   616...620.........630........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions