Job Description P11988 Confidence 98.71% Date Thu Jan 5 11:33:02 GMT 2012 Rank 117 Aligned Residues 305 % Identity 12% Template c3clwF_ PDB info PDB header:structural genomics, unknown function Chain: F: PDB Molecule:conserved exported protein; PDBTitle: crystal structure of conserved exported protein from bacteroides2 fragilis Resolution 2.20 Å

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		75	.	.	.	.	80	.	.	.	.									.	.	.	.	.	90	.	.	.	.									.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Query Sequence		M	G	F	T	C	L	R	I	S	I	.	.	.	.	.	.	.	.	A	W	A	R	I	F	P	Q	G	D	.	.	.	.	.	.	.	.	E	V	E	P	N	E	A	G	L	A	F	Y	D	R	L	F	D	E	M	A	Q	A	G	I	K	P	L	V	T	L	S	H	Y	E	M	P	Y	G	L	V	K	N	Y	G
Query Conservation												.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.																																.								.
Template Conservation																																																																					.								.
Template Sequence		M	A	L	T	N	W	R	V	N	I	G	A	G	S	Y	E	N	R	E	A	K	E	V	D	N	S	W	N	R	T	E	C	F	L	S	P	D	G	K	Y	D	F	T	K	Q	A	G	Q	Q	W	F	M	K	A	A	R	E	R	G	M	N	N	F	L	F	F	T	.	N	S	A	P	Y	F	M	.	T	R	S	A
Template Known Secondary structure					S									S	T	T	T	T	T	T	S	S			S	S	S	T	T					S	B		T	T	S		B		T	T	S	S													T	T									.	S	S			G	G	G	.	S	S	S	S
Template Predicted Secondary structure																																																																					.								.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.		160	.	.	.
		139	140										.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.																								.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.																								.	.	.
Query Sequence		G	W	.	.	.	.	.	.	.	.	.	A	N	R	A	V	I	D	H	F	E	H	Y	A	R	T	V	F	T	R	Y	Q	H	K	.	.	.	V	A	L	W	L	T	F	N	E	I	N	M	S	L	H	A	P	F	T	G	V	G	L	A	E	E	S	G	E	A	E	V	Y	Q	A	I	H	H	Q	L	V	A	S
Query Conservation				.	.	.	.	.	.	.	.	.																								.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.																								.	.	.																																			.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		S	T	V	S	T	D	Q	D	C	I	N	L	Q	N	D	K	F	D	D	F	A	R	F	L	V	K	S	A	Q	H	F	R	E	Q	G	F	H	V	N	Y	I	S	P	N	N	E	P	N	G	Q	W	H	A	N	S	F	Q	E	G	S	F	A	T	K	A	D	L	Y	R	M	V	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S	B		S		S	S	S		S	S		T	T																			T	T										S		T	T	S		G	G	G			S	S		B													.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	A	V	K	A	C	H	S	L	L	P	E	A	K	I	G	N	M	L	L	G	G	L	V	Y	P	L	T	C	Q	P	Q	D	M	L	Q	A	M	E	E	N	R	R	W	M	F	F	G	D	V	Q	A	R	G	Q	Y	P	G	Y	M	Q	R	F	F	R	D	H	N	I	T	I	E	M	T	E	S	D	A	E
Query Conservation
Alig confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	E	L	D	K	A	I	S	E	A	Q	I	D	T	K	I	L	I	P	E	V	G	D	M	K	Y	L	F	E	I	D	S	I	A	K	T	P	D	D	I	I	H	S	M	F	Y	K	D	G	Q	Y	S	V	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												T		S									S	S	G	G	G	G	S				S		T	T	S										S	T	T	S	T	T			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.						.	.	.	.	.	.	.	360	.
Predicted Secondary structure																																																																				.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.
Query Sequence		D	L	K	H	T	V	D	F	I	S	F	S	Y	Y	M	T	G	C	V	S	H	D	E	S	I	N	K	N	A	Q	G	N	I	L	N	M	I	P	N	P	H	L	K	S	S	E	W	G	W	Q	I	D	P	V	G	L	R	V	L	L	N	T	L	W	D	R	.	.	.	.	.	Y	Q	K	P	L	F	I	V	E
Query Conservation																																																																				.	.	.	.	.
Alig confidence		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Conservation		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	F	K	N	L	F	N	C	V	A	A	H	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	S	A	Y	P	A	T	L	L	V	D	I	R	N	R	I	H	K	E	L	S	A	N	G	H	N	T	K	F	W	A	S	E
Template Known Secondary structure		.		T	T										T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S	S	S																	T	T	S	S
Template Predicted Secondary structure		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			290	.	.	.	.	.	.	.	.	.	300	.	.																																		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.		.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		N	G	L	G	A	K	D	S	V	E	A	D	G	S	I	Q	D	D	Y	R	I	A	Y	L	N	D	H	L	V	Q	V	N	E	A	I	A	D	.	G	V	D	I	M	G	Y	T	S	W	G	P	I	D	L	V	S	A	S	H	S	Q	M	S	K	R	Y	G	F	I	Y	V	D	R	D	D	N	G	E	G	S	L
Query Conservation																																							.
Alig confidence																			.																				.				.	.																																	.	.	.	.
Template Conservation																			.																								.	.																																	.	.	.	.
Template Sequence		Y	C	I	L	E	K	N	E	E	I	T	M	P	A	S	P	E	.	R	S	I	N	L	G	L	Y	V	A	R	I	I	H	N	D	L	T	L	A	N	A	S	.	.	A	W	Q	W	W	T	A	V	S	L	G	E	D	V	P	I	Q	L	L	P	L	E	G	S	N	G	L	S	L	Q	Y	D	.	.	.	.	G
Template Known Secondary structure									T	T	T		S	S	S				.																			T	S			S	.	.							S			S	S	S	S	S	S							T	T			S	G	G	G	G	T		.	.	.	.
Template Predicted Secondary structure																			.																								.	.																																	.	.	.	.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.			.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.					.
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	T	R	K	K	S	F	G	W	Y	A	E	V	I	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	S	T	T	K	M	L	W	T	T	A	N	Y	S	F
Template Known Secondary structure																	T
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions