Job Description P11988 Confidence 98.44% Date Thu Jan 5 11:33:02 GMT 2012 Rank 122 Aligned Residues 199 % Identity 18% Template c2y2wC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:arabinofuranosidase; PDBTitle: elucidation of the substrate specificity and protein2 structure of abfb, a family 51 alpha-l-arabinofuranosidase3 from bifidobacterium longum. Resolution 2.50 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.																										.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	E	D	I	A	L	F	A	E	M	G	F	T	C	L	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	A	W	A	R	I	F	P	Q	G	D	E	V	E	P	N	E	A	G	L	A	F	Y	D	R	L	F	D	E	M	A	Q	A	G	I	K	P
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	D	V	L	D	L	V	K	E	L	G	V	T	C	V	R	Y	P	G	G	N	F	V	S	N	Y	N	W	E	D	G	I	G	P	R	E	N	R	P	M	R	R	D	L	A	W	H	C	T	E	T	N	E	M	G	I	.	.	.	.	.	.	.	.	.	.	D	D	F	Y	R	W	S	Q	K	A	G	T	E	I
Template Known Secondary structure												T							S		S	G	G	G	G	G			G	G	G	G	S	S		G	G	G							T	T	T	T						S	S	S		.	.	.	.	.	.	.	.	.	.											T
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.											150	.	.	.	.	.	.	.	.	.	160	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.																.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	V	T	L	S	H	Y	E	M	P	Y	G	L	V	K	N	Y	G	G	W	A	N	R	A	V	I	D	H	F	E	H	Y	A	R	T	V	F	T	R	Y	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	K	V	A	L	W	L	T	F	N	E	I	N	M	S	L	H	A	P	F	T	G	V	G
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.
Template Sequence		M	L	A	V	N	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	R	G	L	K	A	A	L	D	E	L	E	Y	V	N	G	A	P	G	T	A	W	A	D	Q	R	V	A	N	G	I	E	E	P	M	D	I	K	M	W	C	I	G	N	E	M	D	.	.	.	.	.	.	.	.	G	P	W
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S																	T	T	S									T	T			S										S	S				.	.	.	.	.	.	.	.	S	T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.																170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.									.	.	220
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	E	E	S	G	E	A	E	V	Y	Q	A	I	H	H	Q	L	V	A	S	A	R	A	V	K	A	C	H	S	L	L	P	E	A	K	I	G	N	M	L	L	G	G	L	V	Y	P	L	T	C	Q	P	Q	D	M	L	Q	A	M	E	E	N	R	R	W	M	F	F	G	D	V	Q	A	R	G	Q	Y	P	G
Query Conservation
Alig confidence											.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	V	G	H	M	S	P	E	E	.	.	.	.	.	.	.	Y	A	G	A	V	D	K	V	A	H	A	M	K	L	A	E	S	G	L	E	L	V	A	C	G	S	S	G	A	Y	M	P	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	T	T							.	.	.	.	.	.	.																	T	T									S		T	T		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.								230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	M	Q	R	F	F	R	D	H	N	I	T	I	E	M	T	E	S	D	A	E	D	L	K	H	T	V	D	F	I	S	F	S	Y	Y	M	T	G	C	V	S	H	D	E	S	I	N	K	N	A	Q	G	N	I	L	N	M	I	P	N	P	H	L	K	S	S	E	W	G	W	Q	I	D	P	V	G	L	R	V	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	F	G	T	W	E	K	T	V	L	T	K	A	Y	E	N	L	D	F	V	S	C	H	A	Y	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	R	G	H	K	T	R	A	A	A	S	M	Q	D	F	L	A	S	S	E	D	M	T	K	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	T	T											G	G	G											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	T	T	T	T										T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.																			.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		346	.	.	.	350	.	.	.												.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	T	L	W	D	R	Y	.	.	.	.	.	.	.	.	.	.	.	Q	K	P	L	F	I	V	E	N	G	L
Query Conservation										.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	A	T	V	S	D	A	A	D	Q	A	R	E	A	N	N	G	T	K	D	I	A	L	S	F	D	E	W	G	V
Template Known Secondary structure																	T		S	S
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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