Job Description P11988 Confidence 98.35% Date Thu Jan 5 11:33:02 GMT 2012 Rank 126 Aligned Residues 283 % Identity 17% Template c2wnwB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:activated by transcription factor ssrb; PDBTitle: the crystal structure of srfj from salmonella typhimurium Resolution 2.00 Å

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		66	.	.	.	70	.	.				.	.	.	.	.	.	.	80	.	.	.	.											.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure									.	.	.													.	.	.	.	.	.	.	.	.	.																									.
Query SS confidence									.	.	.													.	.	.	.	.	.	.	.	.	.																									.
Query Sequence		P	E	D	I	A	L	F	.	.	.	A	E	M	G	F	T	C	L	R	I	S	I	.	.	.	.	.	.	.	.	.	.	A	W	A	R	I	F	P	Q	G	D	E	V	E	P	N	E	A	G	L	A	F	Y	D	R	.	L	F	D	E	M	A	Q	A	G	I	K	P	L	V	T	L	S	H	Y	E	M	P	Y
Query Conservation									.	.	.													.	.	.	.	.	.	.	.	.	.																									.
Alig confidence									.	.	.													.	.	.	.	.	.	.	.	.	.																									.
Template Conservation
Template Sequence		A	Q	F	L	S	L	Y	F	S	A	Q	E	H	N	Y	T	L	A	R	M	P	I	Q	S	C	D	F	S	L	G	N	Y	A	Y	V	D	S	S	A	D	L	Q	Q	G	R	L	S	F	S	R	D	E	A	H	L	I	P	L	I	S	G	A	L	R	L	N	P	H	M	K	L	M	A	S	P	W	S	P	P	A
Template Known Secondary structure											T	T	T	T										S			S	S	S	S	S				S			S						T	T											T												T	T								S				G
Template Predicted Secondary structure
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		132	.	.	.					.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure						.	.	.	.																													.	.	.
Query SS confidence						.	.	.	.																													.	.	.
Query Sequence		G	L	V	K	.	.	.	.	N	Y	G	G	W	A	N	R	A	V	I	D	H	F	E	H	Y	A	R	T	V	F	T	R	Y	Q	H	K	.	.	.	V	A	L	W	L	T	F	N	E	I	N	M	S	L	H	A	P	F	T	G	V	G	L	A	E	E	S	G	E	A	E	V	Y	Q	A	I	H	H	Q	L	V
Query Conservation						.	.	.	.																													.	.	.
Alig confidence						.	.	.	.																													.	.	.											.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.
Template Sequence		F	M	K	T	N	N	D	M	N	G	G	G	K	L	R	R	E	C	Y	A	D	W	A	D	I	I	I	N	Y	L	L	E	Y	R	R	H	G	I	N	V	Q	A	L	S	V	Q	N	E	P	.	.	.	.	.	.	V	A	V	K	T	W	D	S	C	L	Y	S	V	E	E	E	T	A	F	A	V	Q	Y	L	R
Template Known Secondary structure		G	G	B	T	T	S		S	B	S			B	B		G	G	G																	T	T	T								S		S	S	T	.	.	.	.	.	.	T				S	S	B			B													T
Template Predicted Secondary structure																																																			.	.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.							.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	A	R	A	V	K	A	C	H	S	L	L	P	E	A	K	I	G	N	M	L	L	G	G	L	V	Y	P	L	T	C	Q	P	Q	D	M	L	Q	A	M	E	E	N	R	R	W	M	F	F	G	D	V	Q	A	R	G	Q	Y	P	G	Y	M	Q	R	F	F	R	D	H	N	I	T	I	E	M	T	E	S	D
Query Conservation
Alig confidence				.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	R	.	.	.	.	.	L	A	R	Q	G	M	D	E	M	E	I	Y	I	W	D	H	D	K	D	G	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	W	A	E	L	A	F	A	D	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				.	.	.	.	.				T	T		T	T										G	G	G			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		223	.						.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.																																.	.	.	250	.	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		A	E	D	L	K	H	T	V	D	F	I	S	F	S	Y	Y	M	T	G	C	V	S	H	D	E	S	I	N	K	N	A	Q	G	N	I	L	N	M	I	P	N	P	H	L	K	S	S	E	W	G	W	Q	I	D	P	V	G	L	R	V	L	L	N	T	L	W	D	R	Y	.	Q	K	P	L	F	I	V	E	N	G
Query Conservation																																																																							.
Alig confidence		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	E	A	N	Y	K	G	I	N	G	L	A	F	H	W	Y	T	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	F	S	Q	I	Q	Y	L	A	Q	C	L	P	D	K	K	L	L	F	S	E	G	C
Template Known Secondary structure		.															T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T	S
Template Predicted Secondary structure		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.																																							.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.			.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		L	G	A	K	D	S	V	E	A	D	G	S	I	Q	D	D	Y	R	I	A	Y	L	N	D	H	L	V	Q	V	N	E	A	I	A	D	G	V	D	I	M	G	Y	T	S	W	G	P	I	D	L	V	S	A	.	.	S	H	S	Q	M	S	K	R	Y	G	F	I	Y	V	D	R	D	D	N	G	E	G	S	L	T
Query Conservation																																																							.	.
Alig confidence								.	.	.	.	.	.	.	.																									.	.														.	.				.														.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.																									.	.																			.														.	.	.	.	.
Template Sequence		V	P	M	E	S	D	.	.	.	.	.	.	.	.	A	G	S	Q	I	R	H	W	H	T	Y	L	H	D	M	I	G	N	F	K	S	G	C	S	.	.	G	F	I	D	W	N	L	L	L	N	S	E	G	G	P	N	H	Q	.	G	N	L	C	E	A	P	I	Q	Y	D	A	Q	.	.	.	.	.	N	D	V
Template Known Secondary structure			B				S	.	.	.	.	.	.	.	.	T	T																				T			.	.							S				T	T	S				T	T	.				B			S					T	T	.	.	.	.	.	T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.																									.	.																			.														.	.	.	.	.
Template SS confidence
		297	.	.	300	.	.									.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.						.	.	360
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	R	K	K	S	F	G	W	Y	A	E	V	I	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	R	N	H	S	W	Y	G	I	G	H	F	C	R
Template Known Secondary structure																T
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions