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Job DescriptionP11988
Confidence88.95%DateThu Jan 5 11:33:02 GMT 2012
Rank203Aligned Residues123
% Identity22%Templatec2wcsA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:alpha amylase, catalytic region; PDBTitle: crystal structure of debranching enzyme from nostoc2 punctiforme (npde)
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   34.....40.........50.........60.... .....70.........80.........90...
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Query Sequence  DLQPHGVMGKMEPRILGKENIKDVAIDFYHR. . . . . . . . . . . . . . . . . . . . YPEDIALFAEMGFTCLRISIAWARIFPQG
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Template Sequence  DWVKHAVFYQIFPDRFARSKQPRKRLLQEARWEDWDSMPTLQGYKGGDLWGIMEDLDYIQNLGINAIYFTP. . . . IFQSA
Template Known Secondary structure  TTGGG


GGGT


SS



S
TT

TTTGGG
T

S

TT

S
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S
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   7..10.........20.........30.........40.........50.........60.........70....... ..80..
 
   94.. ...100.........110.........120..... ....130........
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Query Sequence  DEV. . . . . . . . . . EPNEAGLAFYDRLFDEMAQAGIKPLVTLS. . HYEMPYGLVKNYG. . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  SNHRYHTHDYYQVDPMLGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPWVNWFKIEGWPLSPYN
Template Known Secondary structure  TT
TTS
GGGTTT


SB

TTSGGG
TTGGGB
B
SSS

SS
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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   139140.........150.........160.
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Query Sequence  . . . . . . . . . . . . . . . . . . . GWANRAVIDHFEHYARTVFTRYQ
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Template Sequence  GEFPANYVGWAGNRALPEFNHDNPEVREYIMEIAEYWL. KFG
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SS

SB
BGGG
TTSBBB
TTS.T
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   163......170.........180.........190.........200 ...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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