Phyre 2 alignment of P11988 with c2jepB

Job Description P11988
Confidence 100.00% Date Thu Jan 5 11:33:02 GMT 2012

Rank 43 Aligned Residues 328

% Identity 15% Template c2jepB_

PDB info PDB header:hydrolase Chain: B: PDB Molecule:xyloglucanase; PDBTitle: native family 5 xyloglucanase from paenibacillus pabuli

Resolution 1.4 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	K	G	I	S	T	S	D	L	Q	P	H	G	V	M	G	K	M	E	P	R	I	L	G	K	E	N	I	K	D	V	A	I	D	F	Y	H	R	Y	P	E	D	I	A	L	F	A	E	M	G	F	T	C	L	R	I	S	I	A	W	A	R	I	F	P	Q	G	D	E	V	E	P	N	E	A	G	L	A	F	Y
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.
Template Sequence	G	A	G	W	N	L	G	N	Q	L	.	.	.	.	.	.	.	.	.	.	E	A	A	V	N	G	T	P	N	E	T	A	W	G	N	P	T	V	T	P	E	L	I	K	K	V	K	A	A	G	F	K	S	I	R	I	P	V	S	Y	L	N	N	I	G	S	A	P	N	Y	T	I	N	A	A	W	L	N	R	I
Template Known Secondary structure		S						S	S	T	.	.	.	.	.	.	.	.	.	.	T				T	T				T	T	T	T	S															T	T											G	G	G	B			T	T	T			B
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.
Template SS confidence
	43	.	.	.	.	.	.	50	.	.											.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.

	107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																	.	.																									.	.
Query SS confidence																																	.	.																									.	.
Query Sequence	D	R	L	F	D	E	M	A	Q	A	G	I	K	P	L	V	T	L	S	H	Y	E	M	P	Y	G	L	V	K	N	Y	G	.	.	G	W	A	N	R	A	V	I	D	H	F	E	H	Y	A	R	T	V	F	T	R	Y	Q	H	.	.	K	V	A	L	W	L	T	F	N	E	I	N	M	S	L	H	A	P	F	T
Query Conservation																																	.	.																									.	.
Alig confidence																																	.	.																									.	.
Template Conservation
Template Sequence	Q	Q	V	V	D	Y	A	Y	N	E	G	L	Y	V	I	I	N	I	H	G	D	G	Y	N	S	V	Q	G	G	W	L	L	V	N	G	G	N	Q	T	A	I	K	E	K	Y	K	K	V	W	Q	Q	I	A	T	K	F	S	N	Y	N	D	R	L	I	F	E	S	M	N	E	V	F	D	G	N	Y	G	N	P	N
Template Known Secondary structure									T	T	T									G	G	G		T	T	S	T	T					T	T		S																				T	T	T			T	T							S	S				S			S	S
Template Predicted Secondary structure
Template SS confidence
	113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

	183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.				.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence	G	V	G	L	A	E	E	S	G	E	A	E	V	Y	Q	A	I	H	H	Q	L	V	A	S	A	R	A	V	K	A	C	H	S	L	.	.	.	L	P	E	A	K	I	G	N	M	L	L	G	G	L	V	Y	P	L	T	C	Q	P	Q	D	M	L	Q	A	M	E	E	N	R	R	W	M	F	F	G	D	V	Q	A
Query Conservation																																			.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	Y	Y	T	N	L	N	A	Y	N	Q	I	F	V	D	T	V	R	Q	T	G	G	N	N	N	A	R	W	L	L	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.																					S	S	G	G	G	G	T	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.

	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	G	Q	Y	P	G	Y	M	Q	R	F	F	R	D	H	N	I	T	I	E	M	T	E	S	D	A	E	D	L	K	H	T	V	D	F	I	S	F	S	Y	Y	M	T	G	C	V	S	H	D	E	S	I	N	K	N	A	Q	G	N	I	L	N	M	I	P	N	P	H	L	K	S	S	E	W	G	W	Q	I	D	P
Query Conservation
Alig confidence																																																								.	.	.	.
Template Conservation																																																								.	.	.	.
Template Sequence	G	W	N	T	N	I	D	Y	T	V	G	N	Y	G	F	T	L	P	T	D	N	Y	R	S	S	A	I	P	S	S	Q	K	R	I	M	I	S	A	H	Y	Y	S	P	W	D	F	A	G	E	E	N	G	N	I	T	.	.	.	.	Q	W	G	A	T	S	T	N	P	A	K	K	S	T	W	G	Q	E	D	Y	L
Template Known Secondary structure		G	G	G							S	S	S	S							T	T	S		T	T	S		T	T													S					T		S	S	S	S			.	.	.	.	B		S	T	T		S		G	G	G	B		S	S		S
Template Predicted Secondary structure																																																								.	.	.	.
Template SS confidence
	226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280					.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	G	L	R	V	L	L	N	T	L	W	D	R	Y	Q	K	P	L	F	I	V	E	N	G	L	G	A	K	D	S	V	E	A	D	G	S	I	Q	D	D	Y	R	I	A	Y	L	N	D	H	L	V	Q	V	N	E	A	I	A	D	G	V	D	I	M	G	Y	T	S	W	G	P	I	D	L	V	S	A	S	H	S
Query Conservation
Alig confidence																														.	.	.																					.	.	.							.	.	.
Template Conservation																														.	.	.																					.	.	.							.	.	.
Template Sequence	E	S	Q	F	K	S	M	Y	D	K	F	V	T	Q	G	Y	P	V	V	I	G	E	F	G	S	I	D	K	T	.	.	.	S	Y	D	S	S	N	N	V	Y	R	A	A	Y	A	K	A	V	T	A	K	.	.	.	A	K	K	Y	K	M	.	.	.	V	P	V	Y	W	D	N	G	H	N	G	Q	H	G	F	A
Template Known Secondary structure											T	G	G	G	T														T	.	.	.	T	T		T	T																.	.	.				T	T		.	.	.								S			S	T	T
Template Predicted Secondary structure																														.	.	.																					.	.	.							.	.	.
Template SS confidence
	302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330				.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350				.	.	.	.	.	.				.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	M	S	K	R	Y
Query Conservation
Alig confidence	.
Template Conservation	.
Template Sequence	.	L	F	N	R	S
Template Known Secondary structure	.	S			T	T
Template Predicted Secondary structure	.
Template SS confidence
		373	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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