Job Description P76108 Confidence 100.00% Date Thu Jan 5 12:19:01 GMT 2012 Rank 49 Aligned Residues 337 % Identity 13% Template d3thia_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.00

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		R	L	D	I	I	A	W	P	G	Y	I	E	R	G	Q	T	D	K	Q	Y	D	W	V	T	Q	F	E	K	E	T	.	G	C	A	V	N	V	K	T	A	A	T	S	D	E	M	V	S	L	M	T	K	G	G	Y	D	L	V	T	A	S	G	D	A	S	L	R	L	I	M	G	K	R	V	Q	P	I	N	T	A
Query Conservation																																.
Alig confidence											.	.																				.																.	.	.	.
Template Conservation											.	.																																				.	.	.	.
Template Sequence		T	L	K	V	A	I	Y	P	Y	.	.	V	P	D	P	A	R	F	Q	A	A	V	L	D	Q	W	Q	R	Q	E	P	G	V	K	L	E	F	T	D	W	D	S	Y	S	A	D	.	.	.	.	P	P	D	D	L	D	V	F	V	L	D	S	I	F	L	S	H	F	V	D	A	G	Y	L	L	P	F	G	S	Q
Template Known Secondary structure									S		.	.	S	S																		T	T	S									T	T	T			.	.	.	.			T	T								G	G	G							T	T					B		G	G
Template Predicted Secondary structure											.	.																																				.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.			.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.					.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.						160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.
Query SS confidence																																																.	.	.	.	.
Query Sequence		L	I	P	N	W	K	T	L	D	P	R	V	V	K	G	D	W	F	N	V	G	G	K	V	Y	G	T	P	Y	Q	W	G	P	N	L	L	M	Y	N	T	K	T	F	P	T	P	.	.	.	.	.	P	D	S	W	Q	V	V	F	V	E	Q	N	L	P	D	G	K	S	N	K	G	R	V	Q	A	Y	D	G	P
Query Conservation																																																.	.	.	.	.
Alig confidence																	.	.																														.	.	.	.	.
Template Conservation																	.	.
Template Sequence		D	I	D	Q	A	E	D	V	L	P	F	A	L	Q	G	.	.	A	K	R	N	G	E	V	Y	G	L	P	Q	I	L	C	T	N	L	L	F	Y	R	K	G	D	L	K	I	G	Q	V	D	N	I	Y	E	L	Y	K	K	I	G	T	S	H	S	E	Q	I	P	P	P	Q	N	K	G	L	L	I	N	M	A	G
Template Known Secondary structure		G		T	T	G	G	G	B								.	.	T			T	T																		T	T						T			B																S	S													S
Template Predicted Secondary structure																	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		189	190	.	.	.	.	.	.	.	.	.	200						.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.					230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.																														.	.	.	.
Query SS confidence														.	.	.	.	.																														.	.	.	.
Query Sequence		I	Y	I	A	D	A	A	L	F	V	K	A	.	.	.	.	.	T	Q	P	Q	L	G	I	S	D	P	Y	Q	L	T	E	E	Q	Y	Q	A	V	L	K	V	L	R	A	Q	H	.	.	.	.	S	L	I	H	R	Y	W	H	D	T	T	V	Q	M	S	D	F	K	N	E	G	V	V	A	S	S	A	W	P	Y
Query Conservation														.	.	.	.	.																														.	.	.	.
Alig confidence														.	.	.	.	.																														.	.	.	.
Template Conservation
Template Sequence		G	T	T	K	A	S	M	Y	L	E	A	L	I	D	V	T	G	Q	Y	T	E	Y	D	L	L	P	P	L	D	P	L	N	D	K	V	I	R	G	L	R	L	L	I	N	M	A	G	E	K	P	S	Q	Y	V	P	E	D	G	D	A	Y	V	R	A	S	W	F	A	Q	G	S	G	R	A	F	I	G	Y	S	E
Template Known Secondary structure																		T						S	S				S	S	S																										T	T			T	T									T	B								T	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.						280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.
Query SS confidence																						.	.	.	.	.
Query Sequence		Q	A	N	A	L	K	A	E	G	Q	P	V	A	T	V	F	P	K	E	G	.	.	.	.	.	V	T	G	W	A	D	T	T	M	L	H	S	E	A	K	H	P	V	C	A	Y	K	W	M	N	W	S	L	T	P	K	V	Q	G	D	V	A	A	W	F	G	S	L	P	V	V	P	E	G	C	K	A	S	P	L
Query Conservation																						.	.	.	.	.
Alig confidence																						.	.	.	.	.
Template Conservation
Template Sequence		S	M	M	R	M	G	D	Y	A	E	Q	V	R	F	K	P	I	S	S	S	A	G	Q	D	I	P	L	F	Y	S	D	V	V	S	V	N	S	K	T	A	H	P	E	L	A	K	K	L	A	N	V	M	A	S	A	D	T	V	E	Q	A	L	R	P	Q	A	D	G	Q	Y	P	Q	Y	L	L	P	A	R	H	Q
Template Known Secondary structure							G	G	G	G	G	T							B	S		S	S															T	T		S														S									S			S	T	T									S	B
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	E	K	G	C	E	T	N	G	F	N	Y	F	D	K	I	A	F	W	K	T	P	I	A	E	G	G	K	F	V	P	Y	S	R	W	T	Q	D	Y	I	A	I	M	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Y	E	A	L	M	Q	D	Y	P	I	Y	S	E	L	A	Q	I	V	N	K	P	S	N	R	V	F	R	L	G	P	E	V	R	T	W	L	K	D	A	K	Q	V	L	P
Template Known Secondary structure							T	T	T		T										T		T	T								T	T									T	T	T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions