Phyre 2 alignment of P76108 with d1y9ua

Job Description P76108
Confidence 100.00% Date Thu Jan 5 12:19:01 GMT 2012

Rank 53 Aligned Residues 294

% Identity 14% Template d1y9ua_

SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like

Resolution 1.39

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																									.	.																	.
Query SS confidence																																									.	.																	.
Query Sequence	D	I	I	A	W	P	G	Y	I	E	R	G	Q	T	D	K	Q	Y	D	W	V	T	Q	F	E	K	E	T	G	C	A	V	N	V	K	T	A	A	T	S	.	.	D	E	M	V	S	L	M	T	K	G	G	Y	D	L	V	T	.	A	S	G	D	A	S	L	R	L	I	M	G	K	R	V	Q	P	I	N	T	A
Query Conservation																																									.	.																	.
Alig confidence								.	.	.	.																														.	.																	.
Template Conservation								.	.	.	.
Template Sequence	E	V	S	L	Y	T	T	.	.	.	.	R	E	P	K	L	I	Q	P	L	L	D	A	F	A	K	D	S	G	I	K	V	N	T	V	F	V	K	D	G	L	L	E	R	V	R	A	E	G	D	K	S	P	A	D	V	L	M	T	V	D	I	G	N	L	I	D	L	V	N	G	G	V	T	Q	K	I	Q	S	Q
Template Known Secondary structure							S	.	.	.	.	S		G	G	G	T																					S	S										G	G	G										S										T	T
Template Predicted Secondary structure								.	.	.	.
Template SS confidence
	7	.	.	10	.	.	.					.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.

	114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	I	P	N	W	K	T	L	D	P	R	V	V	K	G	D	W	F	N	V	G	G	K	V	Y	G	T	P	Y	Q	W	G	P	N	L	L	M	Y	N	T	K	T	F	P	T	P	P	D	S	W	Q	V	V	F	V	E	Q	N	L	P	D	G	K	S	N	K	G	R	V	Q	A	Y	D	G	P	I	Y	I	A	D
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.																														.														.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.																														.														.	.	.	.	.	.	.
Template Sequence	T	L	D	S	V	V	P	.	.	.	.	.	.	.	.	.	A	N	L	R	G	A	E	G	S	W	Y	A	L	S	L	R	D	R	V	L	Y	V	E	K	D	L	K	L	D	.	S	F	R	Y	G	D	L	A	D	P	K	W	K	.	.	.	.	.	.	.	G	K	V	C	I	R	S	G	Q	H	P	Y	N	T
Template Known Secondary structure						S		.	.	.	.	.	.	.	.	.	G	G	G	B		G	G	G	S															T	T					.			B	G	G	G	G	G		G	G	G	T	.	.	.	.	.	.	.	T							T	T	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.																														.														.	.	.	.	.	.	.
Template SS confidence
	83	.	.	.	.	.	.										90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.								.	.	.	.	.	.	.	.	140	.	.	.	.	.

	194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																								.																																							.	.
Query SS confidence																																								.																																							.	.
Query Sequence	A	A	L	F	V	K	A	T	Q	P	Q	L	G	I	S	D	P	Y	Q	L	T	E	E	Q	Y	Q	A	V	L	K	V	L	R	A	Q	H	S	L	I	.	H	R	Y	W	H	D	T	T	V	Q	M	S	D	F	K	N	E	G	V	V	A	S	S	A	W	P	Y	Q	A	N	A	L	K	A	E	G	Q	P	.	.
Query Conservation																																								.																																							.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																			.																																							.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	A	L	V	A	A	M	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	H	D	G	A	E	A	T	E	K	W	L	R	G	V	K	A	N	L	A	R	K	A	A	G	G	D	R	D	V	A	R	D	I	L	G	G	I	C	D	I	G	L	A	N	A	Y	Y	V	G	H	M	K	N	A	E	P	G	T	D
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.																		B	S	S		S		S											T	T	S		S															S		T	T	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	146	.	.	.	150	.	.	.														.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.

										271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	V	A	T	V	F	P	K	E	G	V	T	G	W	A	D	T	T	M	L	H	S	E	A	K	H	P	V	C	A	Y	K	W	M	N	W	S	L	T	P	K	V	Q	G	D	V	A	A	W	F	G	S	L	P	V	V	P	E	G	C	K	A	S	P	L	L	G	E	K	G	C	E
Query Conservation	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	R	K	W	G	D	A	I	K	V	V	R	P	T	F	A	G	G	T	H	V	N	I	S	G	A	A	V	A	A	H	A	P	N	K	A	N	A	V	K	L	L	E	Y	L	V	S	E	P	A	Q	T	L	Y	A	Q	A	N	Y	E	Y	P	V	R	A	G	V	K	L	D	A	V	V	A	S	F	G	P	L	K
Template Known Secondary structure							T							B					B											T	T		T	T												T	S											T	T				S	S	T	T										T
Template Predicted Secondary structure
Template SS confidence
	213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

	342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	N	G	F	N	Y	F	D	K	I	A	F	W	K	T	P	I	A	E	G	G	K	F	V	P	Y	S	R	W	T	Q	D	Y	I	A	I
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	V	D	T	L	P	V	A	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	Y	R	K	Q	A	S	E	L	V	D	K	V
Template Known Secondary structure	B			S		T				.	.	.	.	.	.	.	.	.	.	.	.	.														T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	297	.	.	300	.	.	.	.	.														.	.	.	.	310	.	.	.	.	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions