Job Description P76108 Confidence 100.00% Date Thu Jan 5 12:19:01 GMT 2012 Rank 51 Aligned Residues 296 % Identity 14% Template d1y4ta_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.80

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.										.
Query SS confidence																																																					.	.	.										.
Query Sequence		G	R	L	D	I	I	A	W	P	G	Y	I	E	R	G	Q	T	D	K	Q	Y	D	W	V	T	Q	F	E	K	E	T	G	C	A	V	N	V	K	T	A	A	T	S	D	E	M	V	S	L	M	T	.	.	.	K	G	G	Y	D	L	V	T	A	.	S	G	D	A	S	L	R	L	I	M	G	K	R	V	Q	P
Query Conservation																																																					.	.	.										.
Alig confidence												.	.	.	.	.	.																																				.	.	.										.
Template Conservation												.	.	.	.	.	.
Template Sequence		S	E	L	N	I	Y	S	A	R	H	.	.	.	.	.	.	Y	N	A	D	F	E	I	I	K	K	F	E	E	K	T	G	I	K	V	N	H	T	Q	A	K	A	S	E	L	I	K	R	L	S	L	E	G	S	N	S	P	A	D	I	F	I	T	A	D	I	S	N	L	T	E	A	K	N	L	G	L	L	S	P
Template Known Secondary structure												.	.	.	.	.	.		T																																			G	G	G									S	S										T	T
Template Predicted Secondary structure												.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.							.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		I	N	T	A	L	I	P	N	W	K	T	L	D	P	R	V	V	K	G	D	W	F	N	V	G	G	K	V	Y	G	T	P	Y	Q	W	G	P	N	L	L	M	Y	N	T	K	T	F	P	.	.	T	P	P	D	S	W	Q	V	V	F	V	E	Q	N	L	P	D	G	K	S	N	K	G	R	V	Q	A	Y	D	G
Query Conservation																																																		.	.
Alig confidence													.	.	.	.	.	.	.	.	.																													.	.																.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.
Template Sequence		V	S	S	K	Y	L	E	E	F	I	P	.	.	.	.	.	.	.	.	.	A	H	L	R	D	K	D	K	E	W	F	A	I	T	K	R	A	R	I	I	A	Y	N	K	N	T	N	I	D	I	S	K	M	K	N	Y	E	D	L	A	K	A	E	F	K	.	.	.	.	.	.	.	G	E	I	V	M	R	S	A
Template Known Secondary structure											S		.	.	.	.	.	.	.	.	.	G	G	G	B		T	T	S	S															T	T	S					T	T			S	G	G	G	G	G		G	G	G	T	.	.	.	.	.	.	.	T							T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.										90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.								.	.	.	.	.	140	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		P	I	Y	I	A	D	A	A	L	F	V	K	A	T	Q	P	Q	L	G	I	S	D	P	Y	Q	L	T	E	E	Q	Y	Q	A	V	L	K	V	L	R	A	Q	H	S	L	I	.	H	R	Y	W	H	D	T	T	V	Q	M	S	D	F	K	N	E	G	V	V	A	S	S	A	W	P	Y	Q	A	N	A	L	K	A
Query Conservation																																															.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	A	P	Y	S	K	T	L	L	A	S	I	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	G	N	K	E	A	K	A	W	A	K	G	V	L	E	N	L	A	T	N	P	K	G	G	D	R	D	Q	A	R	Q	V	F	A	G	E	A	K	F	A	V	M	N	T	Y	Y	I	G	L	L	K	N
Template Known Secondary structure		T	S													.	.	.	.	.	.	.	.	.	.	.	.	.																		B	S	S	S			S	S											T	S		S														T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.														.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		267	.	.	270									.	.	.	.	.	.	.	.				.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.									.	.	.
Query SS confidence						.	.	.	.	.	.	.	.									.	.	.
Query Sequence		E	G	Q	P	.	.	.	.	.	.	.	.	V	A	T	V	F	P	K	E	.	.	.	G	V	T	G	W	A	D	T	T	M	L	H	S	E	A	K	H	P	V	C	A	Y	K	W	M	N	W	S	L	T	P	K	V	Q	G	D	V	A	A	W	F	G	S	L	P	V	V	P	E	G	C	K	A	S	P	L	L
Query Conservation						.	.	.	.	.	.	.	.									.	.	.
Alig confidence						.	.	.	.	.	.	.	.									.	.	.
Template Conservation
Template Sequence		S	K	N	P	K	D	V	E	V	G	N	S	L	G	I	I	F	P	N	Q	D	N	R	G	T	H	I	N	I	S	G	I	A	M	T	K	S	S	K	N	Q	D	A	A	K	K	F	M	E	F	M	L	S	P	E	I	Q	K	I	L	T	D	S	N	Y	E	F	P	I	R	N	D	V	E	L	S	Q	T	V	K
Template Known Secondary structure			S	S									T						T	T	T	T	T	T		B											T	T		S													T	S																S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	K	G	C	E	T	N	G	F	N	Y	F	D	K	I	A	F	W	K	T	P	I	A	E	G	G	K	F	V	P	Y	S	R	W	T	Q	D	Y	I	A	I
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	F	G	T	F	K	E	D	Q	I	P	V	S	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	N	I	K	E	A	V	K	I	Y	D	E	V
Template Known Secondary structure								B			S						.	.	.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.														.	.	.	.	.	310	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions