Job Description P76108 Confidence 100.00% Date Thu Jan 5 12:19:01 GMT 2012 Rank 59 Aligned Residues 259 % Identity 16% Template d1xvya_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.74

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.				.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																																.	.	.											.
Query SS confidence																																																.	.	.											.
Query Sequence		I	I	A	W	P	G	Y	I	E	R	G	Q	T	D	K	Q	Y	D	W	V	T	Q	F	E	K	E	T	G	C	A	V	N	V	K	T	A	A	T	S	D	E	M	V	S	L	M	.	.	.	T	K	G	G	Y	D	L	V	T	A	.	S	G	D	A	S	L	R	L	I	M	G	K	R	V	Q	P	I	N	T	A
Query Conservation																																																.	.	.											.
Alig confidence								.	.	.	.																																					.	.	.											.
Template Conservation								.	.	.	.
Template Sequence		I	V	I	Y	N	A	.	.	.	.	Q	H	E	N	L	V	K	S	W	V	D	G	F	T	K	D	T	G	I	K	V	T	L	R	N	G	G	D	S	E	L	G	N	Q	L	V	Q	E	G	S	A	S	P	A	D	V	F	L	T	E	N	S	P	A	M	V	L	V	D	N	A	K	L	F	A	P	L	D	A	A
Template Known Secondary structure								.	.	.	.	S																																						G	G	G				S					S	S	S									T	T		B
Template Predicted Secondary structure								.	.	.	.
Template SS confidence
		4	.	.	.	.	.					10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		L	I	P	N	W	K	T	L	D	P	R	V	V	K	G	D	W	F	N	V	G	G	K	V	Y	G	T	P	Y	Q	W	G	P	N	L	L	M	Y	N	T	K	T	F	P	T	P	.	.	P	D	S	W	Q	V	V	F	V	E	Q	N	L	P	D	G	K	S	N	K	G	R	V	Q	A	Y	D	G	P	I	Y	I
Query Conservation																																																.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.																														.	.														.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.
Template Sequence		T	L	A	Q	V	E	P	.	.	.	.	.	.	.	.	.	.	Q	Y	R	P	S	H	G	R	W	I	G	I	A	A	R	S	T	V	F	V	Y	N	P	A	K	L	S	D	A	Q	L	P	K	S	L	L	D	L	A	K	P	E	W	K	.	.	.	.	.	.	.	G	R	W	A	A	S	P	S	G	A	D	F
Template Known Secondary structure				T	T	B		G	.	.	.	.	.	.	.	.	.	.	G	G	S		T	T		S	S														T	T	T	S		G	G	G			S	S	G	G	G	G	G	S	G	G	G	T	.	.	.	.	.	.	.	T	S					T	T	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.											.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130								.	.	.	.	.	.	.	.	.	140	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		A	D	A	A	L	F	V	K	A	T	Q	P	Q	L	G	I	S	D	P	Y	Q	L	T	E	E	Q	Y	Q	A	V	L	K	V	L	R	A	Q	H	S	L	I	H	R	Y	W	H	D	T	T	V	Q	M	S	D	F	K	N	E	G	V	V	A	S	S	A	W	P	Y	Q	A	N	A	L	K	A	E	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.																.																																				.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		Q	A	I	V	S	A	L	L	E	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	K	A	T	L	A	W	L	K	A	M	K	T	N	.	F	T	A	Y	K	G	N	S	T	V	M	K	A	V	N	A	G	Q	V	D	S	G	V	I	Y	H	Y	Y	P	F	V	D	G	A	K	T	G	E	N
Template Known Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.																.					S	S											T	S	S	S						T									T	T		T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.															.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.				.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure													.	.	.																																												.
Query SS confidence													.	.	.																																												.
Query Sequence		G	Q	P	V	A	T	V	F	P	K	E	.	.	.	G	V	T	G	W	A	D	T	T	M	L	H	S	E	A	K	H	P	V	C	A	Y	K	W	M	N	W	S	L	T	P	K	V	Q	G	D	V	A	A	W	F	G	S	.	L	P	V	V	P	E	G	C	K	A	S
Query Conservation													.	.	.																																												.
Alig confidence													.	.	.																																												.
Template Conservation
Template Sequence		S	N	N	I	K	L	Y	Y	F	K	H	Q	D	P	G	A	F	V	S	I	S	G	G	G	V	L	A	S	S	K	H	Q	Q	Q	A	Q	A	F	I	K	W	I	T	G	K	Q	G	Q	E	I	L	R	T	N	N	A	F	E	Y	A	V	G	V	G	A	A	S	N	P
Template Known Secondary structure		T	T	T								T	T		G	G	G										B	T	T		T	T													S										S	S	S			B			B	T	T					T
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions