Return to main results Retrieve Phyre Job Id

Job DescriptionP76108
Confidence93.71%DateThu Jan 5 12:19:01 GMT 2012
Rank85Aligned Residues233
% Identity9%Templated1xs5a_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.85

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.........50.........60.........70.........80.........90.........100.........110.
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Query Sequence  PEGRLDIIAWPGYIERGQTDKQYDWVTQFEKETGCAVNVKTAATSDEMVSLMTKGGYDLVTASGDASLRLIMGKRVQPIN
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Template Sequence  KDETVGVGV. . . . . LSEPHARLLEIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFNQEHNGDL.
Template Known Secondary structure 

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STTTTT
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TSSST

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   5....10... ......20.........30.........40.........50.........60.........70........
 
   112.......120.........130.........140.........150.........160.........170.........180.........190.
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Query Sequence  TALIPNWKTLDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPPDSWQVVFVEQNLPDGKSNKGRVQAYDGPIYI
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . VSVGNVHVEPLALYSRT. . . . . . . . . . . . . . . . YRHVSDFPAGAVIAIPNDSSNE
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SS................

SGGG

TT

S
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   7980.........90..... ....100.........110.......
 
   192.......200.........210.........220.........230.........240.........250.........260.........270.
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Query Sequence  ADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRAQHSLIHRYWHDTTVQMSDFKNEGVVASSAWPYQANALKAEGQPV
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Template Sequence  ARALRLLEAAGFIRMRAGSGLFATVEDV. . . . . . . . QQNVRNVVLQEVESALLPRVFDQVDGAVINGNYAIMAGLSARRD
Template Known Secondary structure  TTS

TT

TT

GGG........
TT


GGGGGGSS
TT

TTTT
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   118.120.........130.........140..... ....150.........160.........170.........180.........
 
   272.......280.........290.........300.........310.........320
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Query Sequence  ATVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFG
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Template Sequence  GLAVEP. DASAYANVLVVKRGNEADARVQAVLRALCGGRVRTYLKERYK
Template Known Secondary structure 
S
S.
GGGG
TT
TT
TS
T
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   190..... ....200.........210.........220.........230.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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