Return to main results Retrieve Phyre Job Id

Job DescriptionP76108
Confidence21.75%DateThu Jan 5 12:19:01 GMT 2012
Rank125Aligned Residues170
% Identity13%Templated1r9la_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.59

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.........70.........80.........90.........100......
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Query Sequence  TNLDKPEGRLDIIAWPGYIERGQTDKQYDWVTQFEKETGCAVNVKTAATSDEMVSLMTKGGYDLVTASGDASLRLIMGKR
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Template Sequence  ADLPGKGITVNPVQSTI. . . . TEETFQTLLVSRALEKLGYTVNKPSEVDYNVGYTSLASGDATFT. . . . . . . . . . . . . . .
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   1........10....... ..20.........30.........40.........50.........60.
 
   107..110.........120.........130.........140.........150........ .160.........170.... .....180..
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Query Sequence  VQPINTALIPNWKTLDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPT. PPDSWQVVFVEQNLPD. . . GKSNKGRV
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Template Sequence  . . . . . . . . AVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTADQYKITNIAQLKDPKIAKLFDTNGDGKADL
Template Known Secondary structure  ........TTTTTGGGT
S
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BGGGGGSGGG
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   62.......70.........80.........90.........100.........110.........120.........130...
 
   183......190.........200.........210.........220...
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Query Sequence  QAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLK
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Template Sequence  TGCNPGWGCEGAINHQLAAYELTNTVTHNQGNYAAMMADTI
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TTSTT
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   134.....140.........150.........160.........170....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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