Job Description P76108 Confidence 97.99% Date Thu Jan 5 12:19:01 GMT 2012 Rank 79 Aligned Residues 241 % Identity 12% Template d1pc3a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.16

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		I	E	R	G	Q	T	D	K	Q	Y	D	W	V	T	Q	F	E	K	E	T	.	G	C	A	V	N	V	K	T	A	A	T	S	D	E	M	V	S	L	M	T	K	G	G	Y	D	L	V	T	A	S	G	D	A	S	L	R	L	I	M	G	K	R	V	Q	P	I	N	T	A	L	I	P	N	W	K	T	L	D	P
Query Conservation																						.
Alig confidence																						.														.																	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation																																				.																	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Sequence		G	S	T	L	L	Y	P	L	F	N	L	W	G	P	A	F	H	E	R	Y	P	N	V	T	I	T	A	Q	G	T	G	S	G	A	.	G	I	A	Q	A	A	A	G	T	V	N	I	G	A	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Y	L	S	E	G	D	M	A	A	H	K	.	.	.	.
Template Known Secondary structure				T	T	T															S	T	T							B						.							T	T	S		S					S	.	.	.	.	.	.	.	.	.	.	.	.	.	S										S	T	.	.	.	.
Template Predicted Secondary structure																																				.																	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.														.	.	.	.	.	.	90	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.																.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	V	V	K	G	D	W	F	N	V	G	G	K	V	Y	G	T	P	Y	Q	W	G	P	N	L	L	M	Y	N	T	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	T	P	P	D	S	W	Q	V	V	F	V	E	Q	N	L	P	D	G	K	S	N	K	G	R	V	Q	A	Y	D	G	P
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	G	L	M	N	I	A	L	A	I	S	A	Q	Q	V	N	Y	N	L	P	G	V	S	E	H	L	K	L	N	G	K	V	L	A	A	M	Y	Q	G	T	I	K	T	W	D	D	P	Q	I	A	A	L	N	P	G	V	N	L	P	G	T	A	V	V	P	L	H	R	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	T																		T	T			S															T	S			B	T	T								S	T	T							B							S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.																			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	Y	I	A	D	A	A	L	F	V	K	A	T	Q	P	Q	L	G	I	S	D	P	Y	Q	L	T	E	E	Q	Y	Q	A	V	L	K	V	L	R	A	Q	H	S	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	R	Y	W	H	D	T	T	V	Q	M	S	D	F	K	N	E	G
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	G	S	G	D	T	F	L	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Q	Y	L	S	K	Q	D	P	E	G	W	G	K	S	P	G	F	G	T	T	V	D	F	P	A	V	P	G	A	L	G	E	N	G	N	G	G	M	V	T	G	C	A	E	T	P
Template Known Secondary structure		S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	T	T	T	T	T	T			S	S	S							T	T																	S	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.																									.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.																																							280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	A	S	S	A	W	P	Y	Q	A	N	A	L	K	A	E	G	Q	P	V	A	T	V	F	P	K	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	G	W	A	D	T	T	M	L	H	S	E
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	C	V	A	Y	I	G	I	S	F	L	D	Q	A	S	Q	R	G	L	G	E	A	Q	L	G	N	S	S	G	N	F	L	L	P	D	A	Q	S	I	Q	A	A	A	A	G	F	A	S	K	T	P	A	N	Q	A	I	S	M	I	D	G	P	A	P	D	G	Y	P	I	I	N	Y	E	Y	A	I	V	N	N	R
Template Known Secondary structure		T							G	G	G							T	T									T	T	S						S									T	T	T	T	T				T	T						T	T		S		T	T			S											S	B
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		293	.	.	.				.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		A	K	H	P	.	.	.	V	C	A	Y	K	W	M	N	W	S	L	T	P	K	V	Q	G	D	V	A	A	W	F	G	S	L	P	V	V	P	E	G	C	K	A	S	P	L	L	G	E	K	G
Query Conservation						.	.	.
Alig confidence						.	.	.
Template Conservation
Template Sequence		Q	K	D	A	A	T	A	Q	T	L	Q	A	F	L	H	W	A	I	T	D	G	N	K	A	S	F	L	D	Q	V	H	F	Q	P	L	P	P	A	V	V	K	L	S	D	A	L	I	A	T	I
Template Known Secondary structure			S	S															T	T	G	G	G	S								T		B															T	T
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions