Job Description P76108 Confidence 100.00% Date Thu Jan 5 12:19:01 GMT 2012 Rank 60 Aligned Residues 257 % Identity 16% Template d1nnfa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.10

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.				.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																																.	.	.											.
Query SS confidence																																																.	.	.											.
Query Sequence		I	I	A	W	P	G	Y	I	E	R	G	Q	T	D	K	Q	Y	D	W	V	T	Q	F	E	K	E	T	G	C	A	V	N	V	K	T	A	A	T	S	D	E	M	V	S	L	M	.	.	.	T	K	G	G	Y	D	L	V	T	A	.	S	G	D	A	S	L	R	L	I	M	G	K	R	V	Q	P	I	N	T	A
Query Conservation																																																.	.	.											.
Alig confidence								.	.	.	.																																					.	.	.											.
Template Conservation								.	.	.	.
Template Sequence		I	T	V	Y	N	G	.	.	.	.	Q	Q	K	E	A	A	T	A	V	A	K	A	F	E	Q	E	T	G	I	K	V	T	L	N	S	G	K	S	E	Q	L	A	G	Q	L	K	E	E	G	D	K	T	P	A	D	V	F	Y	T	E	Q	T	A	T	F	A	D	L	S	E	A	G	L	L	A	P	I	S	E	Q
Template Known Secondary structure								.	.	.	.	S																S																						G	G	G				S					S		G	G	G							T	T		B
Template Predicted Secondary structure								.	.	.	.
Template SS confidence
		2	.	.	.	.	.					.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		L	I	P	N	W	K	T	L	D	P	R	V	V	K	G	D	W	F	N	V	G	G	K	V	Y	G	T	P	Y	Q	W	G	P	N	L	L	M	Y	N	T	K	T	F	P	T	P	.	.	P	D	S	W	Q	V	V	F	V	E	Q	N	L	P	D	G	K	S	N	K	G	R	V	Q	A	Y	D	G	P	I	Y	I
Query Conservation																																																.	.
Alig confidence								.	.	.	.	.	.	.	.																																	.	.														.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.
Template Sequence		T	I	Q	Q	T	A	.	.	.	.	.	.	.	.	Q	K	G	V	P	L	A	P	K	K	D	W	I	A	L	S	G	R	S	R	V	V	V	Y	D	H	T	K	L	S	E	K	D	M	E	K	S	V	L	D	Y	A	T	P	K	W	K	.	.	.	.	.	.	.	G	K	I	G	Y	V	S	T	S	G	A	F
Template Known Secondary structure					T	T		.	.	.	.	.	.	.	.		T	T					T	T	S																T	T	T			G	G	G	S		S	S	G	G	G	G	G	S	G	G	G	T	.	.	.	.	.	.	.	T	T					T	T	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.									.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130								.	.	.	.	.	.	.	.	.	140	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	A	A	L	F	V	K	A	T	Q	P	Q	L	G	I	S	D	P	Y	Q	L	T	E	E	Q	Y	Q	A	V	L	K	V	L	R	A	Q	H	S	L	I	H	R	Y	W	H	D	T	T	V	Q	M	S	D	F	K	N	E	G	V	V	A	S	S	A	W	P	Y	Q	A	N	A	L	K	A	E	G	Q	P	V
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Sequence		L	E	Q	V	V	A	L	S	K	M	K	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	A	L	N	W	L	K	G	L	K	E	N	.	G	K	L	Y	A	K	N	S	V	A	L	Q	A	V	E	N	G	E	V	P	A	A	L	I	N	N	Y	Y	W	Y	N	L	A	K	E	K	G	V	E
Template Known Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.														.					S	S										T	T	S		S																		G	G
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.															.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		272	.	.	.								.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.
Query Sequence		A	T	V	F	.	.	.	.	.	.	.	P	K	E	G	V	T	G	W	A	D	T	T	M	L	H	S	E	A	K	H	P	V	C	A	Y	K	W	M	N	W	S	L	T	P	K	V	Q	G	D	V	A	A	W	F	G	S	L	P	V	V	P	E	G
Query Conservation						.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	L	K	S	R	L	Y	F	V	R	H	Q	D	P	G	A	L	V	S	Y	S	G	A	A	V	L	K	A	S	K	N	Q	A	E	A	Q	K	F	V	D	F	L	A	S	K	K	G	Q	E	A	L	V	A	A	R	A	E	Y	P	L	R	A	D	V
Template Known Secondary structure		G		S								T	T		G	G	G										B	T	T		S														S											S							.
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions