Job Description P76108 Confidence 100.00% Date Thu Jan 5 12:19:01 GMT 2012 Rank 54 Aligned Residues 290 % Identity 11% Template d1j1na_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.60

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.					.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.			.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.													.								.	.
Query SS confidence																																																			.	.	.	.													.								.	.
Query Sequence		T	N	L	D	K	P	E	G	R	L	D	I	I	A	W	P	G	Y	I	E	R	G	Q	T	D	K	Q	Y	D	W	V	T	Q	F	E	K	E	T	G	C	A	V	N	V	K	T	A	A	T	.	.	.	.	S	D	E	M	V	S	L	M	T	K	G	G	.	Y	D	L	V	T	A	S	.	.	G	D	A	S	L
Query Conservation																																																			.	.	.	.													.								.	.
Alig confidence																																																			.	.	.	.													.								.	.
Template Conservation
Template Sequence		E	A	T	W	V	T	D	K	P	L	T	L	K	I	H	M	H	F	R	D	K	W	V	W	D	E	N	W	P	V	A	K	E	S	F	R	L	T	N	V	K	L	Q	S	V	A	N	K	A	A	T	N	S	Q	E	Q	F	N	L	M	M	A	S	G	D	L	P	D	V	V	G	G	D	N	L	K	D	K	F	I
Template Known Secondary structure			T	T		S		S	S											T	T	T					T	T	S											S							S		T	T													T	S	S				S					S	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.						.	.	130	.	.	.	.	.	.	.	.	.	140	.	.				.	.	.	.	.	.	.	150	.	.	.	.	.	.	.					.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.																.	.	.																.	.	.	.
Query SS confidence																														.	.	.	.	.																.	.	.																.	.	.	.
Query Sequence		R	L	I	M	G	K	R	V	Q	P	I	N	T	A	L	I	P	N	W	K	T	L	D	P	R	V	V	K	.	.	.	.	.	G	D	W	F	N	V	G	G	K	V	Y	G	T	P	Y	.	.	.	Q	W	G	P	N	L	L	M	Y	N	T	K	T	F	P	.	.	.	.	T	P	P	D	S	W	Q	V	V	F
Query Conservation																														.	.	.	.	.																.	.	.																.	.	.	.
Alig confidence																														.	.	.	.	.																.	.	.																.	.	.	.
Template Conservation
Template Sequence		Q	Y	G	Q	E	G	A	F	V	P	L	N	K	L	I	D	Q	Y	A	P	H	I	K	A	F	F	K	S	H	P	E	V	E	R	A	I	K	A	P	D	G	N	I	Y	F	I	P	Y	V	P	D	G	V	V	A	R	G	Y	F	I	R	E	D	W	L	K	K	L	N	L	K	P	P	Q	N	I	D	E	L	Y
Template Known Secondary structure						T	T	S	B																															T	T	S												S															T	T						B
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		168	.	170	.	.	.	.	.	.							.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210										.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure											.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Query Sequence		V	E	Q	N	L	P	D	G	K	.	.	.	.	.	.	S	N	K	G	R	V	Q	A	Y	D	G	P	I	Y	I	A	D	A	A	L	F	V	K	A	T	Q	P	Q	L	G	I	S	D	P	.	.	.	.	.	.	.	.	.	Y	Q	L	T	E	E	Q	Y	Q	A	V	L	K	V	L	R	A	Q	H	S	L	I
Query Conservation											.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	V	L	K	A	F	K	E	K	D	P	N	G	N	G	K	A	D	E	V	P	F	I	D	R	H	P	D	E	V	F	R	L	V	N	F	W	G	A	R	S	S	G	S	D	N	Y	M	D	F	Y	I	D	N	G	R	V	K	H	P	W	A	E	T	A	F	R	D	G	M	K	H	V	A	Q	W	Y	K	E	G
Template Known Secondary structure										S		T	T		S	S	S									S	S	T	T					G	G	G	G	G	T			S		S	S	S	S	T	T						T	T					G	G	G	S																T	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		233	.	.	.					.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.							.	.	270	.	.	.	.	.	.	.	.	.												280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure						.	.	.	.																																.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.																																.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	R	Y	W	.	.	.	.	H	D	T	T	V	Q	M	S	D	F	K	N	E	G	V	V	A	S	S	A	W	P	Y	Q	A	N	A	L	K	A	E	.	.	.	.	.	.	G	Q	P	V	A	T	V	F	P	K	E	G	.	.	.	.	.	.	.	.	.	.	.	V	T	G	W	A	D	T	T	M	L	H	S
Query Conservation						.	.	.	.																																.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.																																.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	D	K	E	I	F	T	R	K	A	K	A	R	E	Q	M	F	G	G	N	L	G	G	F	T	H	D	W	F	A	S	T	M	T	F	N	E	G	L	A	K	T	V	P	G	F	K	L	I	P	I	A	P	P	T	N	S	K	G	Q	R	W	E	E	D	S	R	Q	K	V	R	P	D	G	W	A	I	T	V
Template Known Secondary structure			B		T	T	T	T	T		G	G	G								T	T														T					T	T	T	T	S	T	T										B		T	T	S				B						S	S		S						B	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	K	H	P	V	C	A	Y	K	W	M	N	W	S	L	T	P	K	V	Q	G	D	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	K	N	P	V	E	T	I	K	F	F	D	F	Y	F	S	R	P	G	R	D	I	S	N
Template Known Secondary structure		T		S												T	T	S
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions