Job Description P76108 Confidence 100.00% Date Thu Jan 5 12:19:01 GMT 2012 Rank 37 Aligned Residues 322 % Identity 17% Template c3rpwA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter; PDBTitle: the crystal structure of an abc transporter from rhodopseudomonas2 palustris cga009 Resolution 1.65 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.
Query SS confidence																																																										.	.	.
Query Sequence		P	E	G	R	L	D	I	I	A	W	P	G	Y	I	E	R	G	Q	T	D	K	Q	Y	D	W	V	T	Q	F	E	K	E	T	G	C	A	V	N	V	K	T	A	A	T	S	D	E	M	V	S	L	M	T	K	G	G	.	.	.	Y	D	L	V	T	A	S	G	D	A	S	L	R	L	I	M	G	K	R	V	Q
Query Conservation																																																										.	.	.
Alig confidence														.	.	.																																										.	.	.								.
Template Conservation														.	.	.																																																				.
Template Sequence		Q	S	N	V	V	I	X	Q	D	P	G	G	.	.	.	G	Y	G	D	A	L	R	K	V	X	Y	D	P	F	E	K	E	T	G	I	K	V	V	T	V	Q	E	A	R	S	G	P	R	I	K	A	Q	A	E	A	G	K	A	Q	W	D	L	T	F	I	F	.	D	Q	E	T	K	L	L	G	D	C	C	L	A
Template Known Secondary structure				S										.	.	.										T									S									S													T					S	B					.							T					B
Template Predicted Secondary structure														.	.	.																																																				.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		P	I	N	T	A	L	I	P	N	W	K	T	L	D	P	R	V	V	K	G	D	W	F	N	V	G	G	K	V	Y	G	T	P	Y	Q	W	G	P	N	L	L	M	Y	N	T	K	T	F	P	.	.	T	P	P	D	S	W	Q	V	V	F	V	E	Q	N	L	P	D	G	K	S	N	K	G	R	V	Q	A	Y	D
Query Conservation																																																			.	.
Alig confidence													.	.	.	.																																			.	.															.	.	.	.	.	.
Template Conservation													.	.	.	.																																																			.	.	.	.	.	.
Template Sequence		D	I	D	Y	S	K	L	S	E	S	A	.	.	.	.	H	K	T	L	A	A	X	P	D	N	L	K	R	K	K	G	V	A	L	Q	V	I	G	V	G	L	V	Y	N	K	D	K	F	K	G	D	K	A	P	Q	T	W	A	D	F	W	D	V	K	K	.	.	.	.	.	.	F	P	G	R	R	C	X	P	A
Template Known Secondary structure					G	G	G	S					.	.	.	.						T	S		G	G	G			T	T															T	T	T	S		T	T	S	S			S							T	T	T	.	.	.	.	.	.	S		S						S
Template Predicted Secondary structure													.	.	.	.																																																			.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.					.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.							.	.	.	.	.	170	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	I	Y	I	A	D	A	A	L	F	V	K	A	T	Q	P	Q	L	G	I	S	D	P	Y	Q	L	T	E	E	Q	Y	Q	A	V	L	K	V	L	R	A	Q	H	S	L	I	H	R	Y	W	H	D	T	T	V	Q	M	S	D	F	K	N	E	G	V	V	A	S	S	A	W	P	Y	Q	A	N	A	L	K	A
Query Conservation
Alig confidence																			.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.
Template Sequence		W	P	R	F	T	F	E	A	A	L	X	A	D	G	V	T	K	.	.	.	.	.	.	.	D	K	L	Y	P	I	D	X	D	R	A	L	K	K	L	K	E	I	K	P	H	V	V	K	W	W	T	T	A	A	Q	P	P	Q	L	I	L	D	G	E	A	D	X	C	L	A	Y	T	G	S	X	S	K	L	A	L
Template Known Secondary structure		S	S	T	T									T	T			T	.	.	.	.	.	.	.	T	S			S														G	G	G							S	T	T								T	T	S		S
Template Predicted Secondary structure																			.	.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190								.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	Q	P	V	A	T	V	F	P	K	E	G	V	T	G	W	A	D	T	T	M	L	H	S	E	A	K	H	P	V	C	A	Y	K	W	M	N	W	S	L	T	P	K	V	Q	G	D	V	A	A	W	F	G	S	L	P	V	V	P	E	G	C	K	A	S	P	L	L	G	E	K	G	C	E	T	N	G	F	N
Query Conservation
Alig confidence												.	.
Template Conservation												.	.
Template Sequence		E	G	A	P	I	D	L	T	F	N	.	.	Q	G	F	V	Y	Y	D	F	F	S	I	P	K	G	A	P	N	Y	D	N	A	L	K	L	L	S	W	R	L	D	P	K	R	A	A	Q	L	T	S	T	F	P	V	A	L	P	S	K	V	V	F	D	A	A	T	D	K	N	I	A	R	Y	W	A	N	N	P	E
Template Known Secondary structure			T		S							.	.												B	T	T		T	T												T												S			B		S									S		G	G	G	G	G	G	S	T	T	S
Template Predicted Secondary structure												.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		347	.	.	350	.	.	.	.	.				.	.	.	.	360	.	.	.	.	.	.	.	.	.	370		.	.	.	.	.	.
Predicted Secondary structure											.	.	.																.
Query SS confidence											.	.	.																.
Query Sequence		Y	F	D	K	I	A	F	W	K	.	.	.	T	P	I	A	E	G	G	K	F	V	P	Y	S	R	W	.	T	Q	D	Y	I	A
Query Conservation											.	.	.																.
Alig confidence											.	.	.																.
Template Conservation
Template Sequence		N	V	A	K	A	I	E	W	S	P	D	F	W	G	A	P	S	P	A	G	N	S	T	N	E	E	Y	G	Q	E	K	L	N	A
Template Known Secondary structure						S										S	B		T	T	S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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