Job Description P76108 Confidence 100.00% Date Thu Jan 5 12:19:01 GMT 2012 Rank 29 Aligned Residues 344 % Identity 13% Template c3oo6A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:abc transporter binding protein acbh; PDBTitle: crystal structures and biochemical characterization of the bacterial2 solute receptor acbh reveal an unprecedented exclusive substrate3 preference for b-d-galactopyranose Resolution 2.15 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.															.
Query SS confidence																																														.	.	.															.
Query Sequence		G	R	L	D	I	I	A	W	P	G	Y	I	E	R	G	Q	T	D	K	Q	Y	D	W	V	T	Q	F	E	K	E	T	G	C	A	V	N	V	K	T	A	A	T	S	D	.	.	.	E	M	V	S	L	M	T	K	G	G	Y	D	L	V	.	T	A	S	G	D	A	S	L	R	L	I	M	G	K	R	V	Q	P
Query Conservation																																														.	.	.															.
Alig confidence																																														.	.	.															.
Template Conservation
Template Sequence		G	N	G	P	I	T	F	G	S	N	Y	S	D	E	A	P	K	A	A	F	A	S	L	M	Q	Q	A	T	T	S	T	T	V	P	V	T	V	N	T	T	D	H	N	T	F	Q	N	N	I	S	N	Y	L	Q	G	T	P	D	S	L	A	T	W	F	A	G	Y	R	L	Q	F	F	A	A	Q	G	L	L	T	P
Template Known Secondary structure				S										S																																			T							S				S							T								T	T	T		B
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.					.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.
Query SS confidence																																																		.	.	.	.
Query Sequence		I	N	T	A	L	I	P	N	W	K	T	L	D	P	R	V	V	K	G	D	W	F	N	V	G	G	K	V	Y	G	T	P	Y	Q	W	G	P	N	L	L	M	Y	N	T	K	T	F	P	.	.	.	.	T	P	P	D	S	W	Q	V	V	F	V	E	Q	N	L	P	D	G	K	S	N	K	G	R	V	Q	A	Y
Query Conservation																																																		.	.	.	.
Alig confidence																						.																												.	.	.	.
Template Conservation																						.
Template Sequence		I	D	D	V	W	D	K	I	G	G	T	F	N	D	A	A	K	S	L	S	.	K	G	L	D	G	H	Y	Y	L	V	P	L	Y	N	Y	P	W	V	V	F	Y	N	K	S	V	F	Q	S	K	G	Y	E	V	P	A	S	W	E	A	F	I	A	L	A	R	K	M	Q	S	D	G	L	V	P	L	A	F	A	D
Template Known Secondary structure										G	G	G	S							T	T	.	B		T	T	S		B																							T						B														T	T	S
Template Predicted Secondary structure																						.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.						.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.																													.	.
Query SS confidence																								.	.	.	.	.																													.	.
Query Sequence		D	G	P	I	Y	I	A	D	A	A	L	F	V	K	A	T	Q	P	Q	L	G	I	.	.	.	.	.	S	D	P	Y	Q	L	T	E	E	Q	Y	Q	A	V	L	K	V	L	R	A	Q	H	S	L	I	H	R	Y	.	.	W	H	D	T	T	V	Q	M	S	D	F	K	N	E	G	V	V	A	S	S	A	W	P
Query Conservation																								.	.	.	.	.																													.	.
Alig confidence																								.	.	.	.	.																													.	.
Template Conservation
Template Sequence		K	D	G	W	P	A	L	G	T	F	D	I	L	N	L	R	I	N	G	Y	D	Y	H	I	K	L	M	K	H	E	V	P	W	T	D	P	G	V	T	K	V	F	D	Q	W	R	E	L	A	A	Y	Q	Q	K	G	A	N	G	R	T	W	Q	D	A	A	K	A	L	E	N	K	Q	A	G	M	M	F	Q	G	S
Template Known Secondary structure		T	T	S	S	T	T												T										T	T	S	S		T	T	S															T	T	B		S	S	G	G	G												T	T	S
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.											.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	Q	A	N	A	L	K	A	E	G	Q	P	V	A	T	V	F	.	.	.	.	.	.	.	.	.	.	P	K	E	G	V	T	G	W	A	D	T	T	M	L	H	S	E	A	K	H	P	V	C	A	Y	K	W	M	N	W	S	L	T	P	K	V	Q	G	D	V	A	A	W	F	G	S	L	P	V	V	P	E	G
Query Conservation																			.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	Q	V	A	A	N	Y	S	A	K	N	L	P	D	L	D	F	F	V	F	P	A	I	N	P	Q	Y	G	T	D	Y	M	D	A	P	T	D	G	F	I	L	P	K	K	G	K	N	A	A	A	A	K	K	V	L	Q	Y	I	G	T	A	E	A	E	A	A	F	L	K	T	D	H	W	D	V	G	L	A	N	G
Template Known Secondary structure								S		T	T	T	G	G	G								B			T	T	T	T	T													B	T	T		S													T	S									T	T			S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	K	A	S	P	L	L	G	E	K	G	C	E	T	N	G	F	N	Y	F	D	K	I	A	F	W	K	T	P	I	A	E	G	G	K	F	V	P	Y	S	R	W	T	Q	D	Y	I	A	I	M	G	G	R
Query Conservation
Alig confidence								.	.	.
Template Conservation								.	.	.
Template Sequence		L	I	A	P	T	Y	.	.	.	N	D	I	Q	K	K	S	V	A	E	I	G	K	C	K	S	V	S	Q	F	M	D	R	D	T	V	P	D	M	A	N	A	M	I	K	L	I	Q	Q	F	I	D	Q	P
Template Known Secondary structure					T	T		.	.	.														S	S										S
Template Predicted Secondary structure								.	.	.
Template SS confidence
		334	.	.	.	.	.				340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions