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Job DescriptionP76108
Confidence100.00%DateThu Jan 5 12:19:01 GMT 2012
Rank10Aligned Residues338
% Identity15%Templatec3mp6A_
PDB info PDB header:histone binding proteinChain: A: PDB Molecule:maltose-binding periplasmic protein, linker, saga- PDBTitle: complex structure of sgf29 and dimethylated h3k4
Resolution1.48 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........40.........50.........60.........70...... ...80....... ..90.........100........
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Query Sequence  KPEGRLDIIAWPGYIERGQTDKQYDWVTQFEKETGCAVNVKTAATS. DEMVSLMTKGG. YDLVTASGDASLRLIMGKRVQ
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Template Sequence  IEEGKLVIWINGD. . . . KGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLA
Template Known Secondary structure  TTTTS

TT....S





TTTT
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SGGGTT
B
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   740.........750.. .......760.........770.........780.........790.........800.........810.....
 
   109110.........120.........130.........140.........150.........160.........170.........180........
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Query Sequence  PINTALIPNWKTLDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPPDSWQVVFVEQNLPDGKSNKGRVQAYDGP
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Template Sequence  EITPD. KAFQDKLYPFTWDAVR. . YNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEP
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.TB
T..TT
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TTT
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SBGGGTTT



SSSG
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   816...820 .........830...... ...840.........850.........860.........870.........880.........890..
 
   189190.........200......... 210.........220.........230...... ...240.........250.........260...
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Query Sequence  IYIADAALFVKATQPQLGISD. . . . PYQLTEEQYQAVLKVLRAQHSLIHRYW. HDTTVQMSDFKNEGVVASSAWPYQANA
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Template Sequence  YFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSN
Template Known Secondary structure  GGTTT
TTTTSTTSS
TT

TTS
GGG
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   893......900.........910.........920.........930.........940.........950.........960.........970..
 
   264.....270....... ..280.........290.........300.... .....310.........320.........330......
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Query Sequence  LKAEGQPVATVFPK. . . . . . EGVTGWADTTMLHSEAKHPVCAYKWMN. WSLTPKVQGDVAAWFGSLPVVPEGCKASPLLG
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Template Sequence  IDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYE. . . . . .
Template Known Secondary structure  SS




BBTTB



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   973......980.........990.........1000.........1010.........1020.........1030.........1040......
 
   337..340.........350.........360......... 370.........380.
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Query Sequence  EKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSR. WTQDYIAIMGGR
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Template Sequence  EELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGR
Template Known Secondary structure  TT
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STTTS
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   1047..1050.........1060.........1070.........1080.........1090..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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