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Job DescriptionP76108
Confidence100.00%DateThu Jan 5 12:19:01 GMT 2012
Rank25Aligned Residues341
% Identity12%Templatec3k02A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:acarbose/maltose binding protein gach; PDBTitle: crystal structures of the gach receptor of streptomyces glaucescens2 gla.o in the unliganded form and in complex with acarbose and an3 acarbose homolog. comparison with acarbose-loaded maltose binding4 protein of salmonella typhimurium.
Resolution1.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40.........50.........60.... .....70....... ..80....... ..90.........100......
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Query Sequence  EGRLDIIAWPGYIERGQTDKQYDWVTQFEKET. GCAVNVKTAATSD. . . EMVSLMTKGG. . YDLVTASGDASLRLIMGKR
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Template Sequence  SGTVTFWDTS. . . NEAEKATYQALAEGFEKEHPKVDVKYVNVPFGEANAKFKNAAGGNSGAPDVMRTEVAWVADFASIGY
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   1920........ .30.........40.........50.........60.........70.........80.........90.....
 
   107..110.........120.........130.........140.........150........ .160.........170.........180..
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Query Sequence  VQPINTALIPNWKTLDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPT. . . . PPDSWQVVFVEQNLPDGKSNKGRV
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Template Sequence  LAPLDGTPALDDGSDHLPQA. AASTRYEGKTYAVPQVIDTLALFYNKELLTKAGVEVPGSVAELKTAAAEITEKTGATGL
Template Known Secondary structure  B


TTSTT
SSGGGB
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   96...100.........110..... ....120.........130.........140.........150.........160.........170....
 
   183......190.........200.........210.........220.........230....... ..240.........250.........
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Query Sequence  QAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRAQHSLIHRYWH. . . DTTVQMSDFKNEGVVASSAWPY
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Template Sequence  YLRGDDPYWFLPYLYGEGGDLVDEKNKTVTVDDEAGVRAYRVIKDLVDSKAAITDASDGWNNMQNAFKSGKVAMMVNGPW
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   175....180.........190.........200.........210.........220.........230.........240.........250....
 
   260.........270.. .......280.........290.........300.........310.........320.........
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Query Sequence  QANALKAEGQPVA. . . . . . . . . . TVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFGSLPVVPEGC
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Template Sequence  AIEDVKAGARFKDAGNLGVAPVPAGSAGQGSPQGGWNLSVYAGSKNLDASYAFVKYMSSAKVQQQTTEKLSLLPTRTSVY
Template Known Secondary structure  GTSGGGSSGGG


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   255....260.........270.........280.........290.........300.........310.........320.........330....
 
   330.........340.........350.........360.........370.........380.
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Query Sequence  KASPLLGEKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSRWTQDYIAIMGGR
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Template Sequence  EVPSVADNEMVKF. . . . FKPAVDKAVERPWIAEGNALFEPIRLQMANVLSGE
Template Known Secondary structure  GST
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   335....340....... ..350.........360.........370.........380..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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