Phyre 2 alignment of P76108 with c3iouB

Job Description P76108
Confidence 100.00% Date Thu Jan 5 12:19:01 GMT 2012

Rank 34 Aligned Residues 340

% Identity 14% Template c3iouB_

PDB info PDB header:signaling protein Chain: B: PDB Molecule:maltose-binding protein, huntingtin fusion PDBTitle: huntingtin amino-terminal region with 17 gln residues -2 crystal c94

Resolution 3.70 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.													.
Query SS confidence																																														.													.
Query Sequence	K	P	E	G	R	L	D	I	I	A	W	P	G	Y	I	E	R	G	Q	T	D	K	Q	Y	D	W	V	T	Q	F	E	K	E	T	G	C	A	V	N	V	K	T	A	A	T	.	S	D	E	M	V	S	L	M	T	K	G	G	.	Y	D	L	V	T	A	S	G	D	A	S	L	R	L	I	M	G	K	R	V	Q
Query Conservation																																														.													.
Alig confidence														.	.	.	.																													.													.
Template Conservation														.	.	.	.
Template Sequence	I	E	E	G	K	L	V	I	W	I	N	G	D	.	.	.	.	K	G	Y	N	G	L	A	E	V	G	K	K	F	E	K	D	T	G	I	K	V	T	V	E	H	P	D	K	L	E	E	K	F	P	Q	V	A	A	T	G	D	G	P	D	I	I	F	W	A	H	D	R	F	G	G	Y	A	Q	S	G	L	L	A
Template Known Secondary structure			S	S	S	B						T	T	.	.	.	.	S	S																			B			B			T	T											T	T		S		S						G	G	G								T		B
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.					.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.

	109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	I	N	T	A	L	I	P	N	W	K	T	L	D	P	R	V	V	K	G	D	W	F	N	V	G	G	K	V	Y	G	T	P	Y	Q	W	G	P	N	L	L	M	Y	N	T	K	T	F	P	T	P	P	D	S	W	Q	V	V	F	V	E	Q	N	L	P	D	G	K	S	N	K	G	R	V	Q	A	Y	D	G	P
Query Conservation
Alig confidence																	.	.	.
Template Conservation																	.	.	.
Template Sequence	E	I	T	P	D	K	A	F	Q	D	K	L	Y	P	F	T	.	.	.	W	D	A	V	R	Y	N	G	K	L	I	A	Y	P	I	A	V	E	A	L	S	L	I	Y	N	K	D	L	L	P	N	P	P	K	T	W	E	E	I	P	A	L	D	K	E	L	K	A	K	G	K	S	A	L	M	F	N	L	Q	E	P
Template Known Secondary structure										T	S	S		T	G	G	.	.	.	G	G	G	G		S	T	T								B										T	T	T		S	S			S	B	S	T	T									T	T	T	T		B	S					S	S
Template Predicted Secondary structure																	.	.	.
Template SS confidence
	78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.

	189	190	.	.	.	.	.	.					.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure									.	.	.	.																																										.
Query SS confidence									.	.	.	.																																										.
Query Sequence	I	Y	I	A	D	A	A	L	.	.	.	.	F	V	K	A	T	Q	P	Q	L	G	I	S	D	P	Y	Q	L	T	E	E	Q	Y	Q	A	V	L	K	V	L	R	A	Q	H	S	L	I	H	R	Y	W	H	.	D	T	T	V	Q	M	S	D	F	K	N	E	G	V	V	A	S	S	A	W	P	Y	Q	A	N	A
Query Conservation									.	.	.	.																																										.
Alig confidence									.	.	.	.																																										.
Template Conservation
Template Sequence	Y	F	T	W	P	L	I	A	A	D	G	G	Y	A	F	K	Y	E	N	G	K	Y	D	I	K	D	V	G	V	D	N	A	G	A	K	A	G	L	T	F	L	V	D	L	I	K	N	K	H	M	N	A	D	T	D	Y	S	I	A	E	A	A	F	N	K	G	E	T	A	M	T	I	N	G	P	W	A	W	S	N
Template Known Secondary structure									T	T	T			S	S				S	S				S	S			T	T	S	S																T	T	S	S		T	T										T	T	T	T	S	B	S						G	G	G
Template Predicted Secondary structure
Template SS confidence
	155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

	264	.	.	.	.	.	270	.	.	.	.	.	.							.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.
Query Sequence	L	K	A	E	G	Q	P	V	A	T	V	F	P	.	.	.	.	.	.	K	E	G	V	T	G	W	A	D	T	T	M	L	H	S	E	A	K	H	P	V	C	A	Y	K	W	M	N	W	S	L	T	P	K	V	Q	G	D	V	A	A	W	F	G	S	L	P	V	V	P	E	G	C	K	A	S	P	L	L	G	E
Query Conservation														.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.
Template Conservation
Template Sequence	I	D	T	S	K	V	N	Y	G	V	T	V	L	P	T	F	K	G	Q	P	S	K	P	F	V	G	V	L	S	A	G	I	N	A	A	S	P	N	K	E	L	A	K	E	F	L	E	N	Y	L	L	T	D	E	G	L	E	A	V	N	K	D	K	P	L	G	A	V	A	L	K	S	Y	E	E	E	L	A	K	D
Template Known Secondary structure				T											B	B	T	T	B														B	S	S		S												T	T	S	S									T	T	S			S	S	B	S		S	T	T	T	T	T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
	235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

	338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	G	C	E	T	N	G	F	N	Y	F	D	K	I	A	F	W	K	T	P	I	A	E	G	G	K	F	V	P	Y	S	R	W	T	Q	D	Y	I	A	I	M	G	G	R
Query Conservation
Alig confidence						.	.	.	.
Template Conservation						.	.	.	.
Template Sequence	P	R	I	A	A	.	.	.	.	T	M	E	N	A	Q	K	G	E	I	M	P	N	I	P	Q	M	S	A	F	W	Y	A	V	R	T	A	V	I	N	A	A	S	G	R
Template Known Secondary structure						.	.	.	.							S	S						S																		T	T	T	S
Template Predicted Secondary structure						.	.	.	.
Template SS confidence
	315	.	.	.	.					320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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