Job Description P76108 Confidence 100.00% Date Thu Jan 5 12:19:01 GMT 2012 Rank 50 Aligned Residues 346 % Identity 10% Template c3i3vC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:probable secreted solute-binding lipoprotein; PDBTitle: crystal structure of probable secreted solute-binding2 lipoprotein from streptomyces coelicolor Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																					.													.	.												.								.
Query SS confidence																																					.													.	.												.								.
Query Sequence		D	K	P	E	G	R	L	D	I	I	A	W	P	G	Y	I	E	R	G	Q	T	D	K	Q	Y	D	W	V	T	Q	F	E	K	E	T	.	G	C	A	V	N	V	K	T	A	A	T	S	.	.	D	E	M	V	S	L	M	T	K	G	G	.	Y	D	L	V	T	A	S	.	G	D	A	S	L	R	L	I	M	G
Query Conservation																																					.													.	.												.								.
Alig confidence																.																					.													.	.												.								.
Template Conservation																.
Template Sequence		D	S	D	P	D	T	L	V	V	H	T	Q	L	G	.	T	T	A	P	G	S	P	T	Y	L	A	A	V	D	R	F	R	E	E	N	P	G	V	K	I	K	N	L	V	N	G	D	D	L	A	Q	V	Y	E	T	S	R	L	A	R	K	E	A	D	V	V	X	V	N	L	Y	D	K	T	L	A	W	T	D	V
Template Known Secondary structure				S	T	T							S		S	.	S	S	S	T	T																T	T									S	T	T											T	T				S							S	T	T	G	G	G
Template Predicted Secondary structure																.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.						.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure															.																																										.	.	.	.	.
Query SS confidence															.																																										.	.	.	.	.
Query Sequence		K	R	V	Q	P	I	N	T	A	L	I	P	N	.	W	K	T	L	D	P	R	V	V	K	G	D	W	F	N	V	G	G	K	V	Y	G	T	P	Y	Q	W	G	P	N	L	L	M	Y	N	T	K	T	F	P	T	.	.	.	.	.	P	P	D	S	W	Q	V	V	F	V	E	Q	N	L	P	D	G	K	S	N
Query Conservation															.																																										.	.	.	.	.
Alig confidence															.																																										.	.	.	.	.
Template Conservation
Template Sequence		G	A	T	V	D	V	K	P	Y	L	D	D	W	G	L	R	G	R	V	L	P	A	A	L	A	D	W	T	D	D	E	G	R	V	R	A	F	P	Y	F	A	T	N	W	P	V	A	Y	N	R	A	L	L	D	R	A	G	V	D	A	I	P	T	T	G	D	Q	L	I	A	A	A	R	K	L	R	A	K	G	I
Template Known Secondary structure		T	S	S									G	G	G		T	T	S	B								T	B		T	T	S		B		S	B																				T			S				B														T	T
Template Predicted Secondary structure
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.					.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																								.	.	.																																						.	.	.	.
Query SS confidence																								.	.	.																																						.	.	.	.
Query Sequence		K	G	R	V	Q	A	Y	D	G	P	I	Y	I	A	D	A	A	L	F	V	K	A	.	.	.	T	Q	P	Q	L	G	I	S	D	P	Y	Q	L	T	E	E	Q	Y	Q	A	V	L	K	V	L	R	A	Q	H	S	L	I	H	R	Y	W	H	.	.	.	.	D	T	T	V	Q	M	S	D	F	K	N	E	G	V
Query Conservation																								.	.	.																																						.	.	.	.
Alig confidence																								.	.	.																																						.	.	.	.
Template Conservation
Template Sequence		A	P	V	T	V	G	G	N	D	W	T	G	Q	K	L	L	A	Q	I	I	Q	T	F	L	S	Q	D	E	A	R	H	V	Y	S	T	G	D	F	G	V	R	G	A	R	L	G	I	E	Y	F	A	H	L	R	D	A	G	V	F	A	D	K	A	Q	G	L	T	S	D	S	X	T	T	Q	F	N	T	E	E	A
Template Known Secondary structure								T	T	S												G	G	G													T		T	T	S																T	T		B		T	T	G	G	G												T	T	S
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.											280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.													.	.	.	.	.	.	.	.	.	.																.
Query SS confidence																		.	.													.	.	.	.	.	.	.	.	.	.																.
Query Sequence		V	A	S	S	A	W	P	Y	Q	A	N	A	L	K	A	E	.	.	G	Q	P	V	A	T	V	F	P	K	E	G	.	.	.	.	.	.	.	.	.	.	V	T	G	W	A	D	T	T	M	L	H	S	E	A	K	.	H	P	V	C	A	Y	K	W	M	N	W	S	L	T	P	K	V	Q	G	D	V	A	A	W
Query Conservation																		.	.													.	.	.	.	.	.	.	.	.	.																.
Alig confidence																		.	.													.	.	.	.	.	.	.	.	.	.																.
Template Conservation
Template Sequence		A	V	Q	S	A	X	S	S	A	L	A	K	V	P	E	K	V	A	G	H	T	E	V	G	G	W	P	L	A	D	G	A	A	H	D	G	P	T	V	I	R	A	Y	T	L	I	G	F	W	I	S	P	N	G	V	R	K	I	E	Q	V	E	K	F	L	R	F	X	Y	R	P	D	V	V	A	R	F	V	T	E
Template Known Secondary structure												T	T	S							T						B		B		T	T		S	S	S	S									S	S											T												T	S
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	S	L	P	V	V	P	E	G	C	K	A	S	P	L	L	G	E	K	G	C	E	T	N	G	F	N	Y	F	D	K	I	A	F	W	K	T	P	I	A	E	G	G	K	F	V	P	Y	S	R	W	T	Q	D	Y	I	A	I	M	G	G	R
Query Conservation
Alig confidence																																										.	.	.	.	.
Template Conservation																																										.	.	.	.	.
Template Sequence		S	G	R	D	X	A	L	R	T	D	A	V	S	T	G	F	P	L	V	G	A	A	Q	R	L	G	S	E	V	S	Q	V	L	L	P	D	V	Y	V	P	.	.	.	.	.	P	A	A	A	Q	P	L	I	T	A	T	S	T	S	F	T	R	G
Template Known Secondary structure							S	B			S				T	T	S								T			T	T	S						G	G	G	T	S		.	.	.	.	.																S	T	T
Template Predicted Secondary structure																																										.	.	.	.	.
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.						.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions