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Job DescriptionP76108
Confidence94.42%DateThu Jan 5 12:19:01 GMT 2012
Rank84Aligned Residues231
% Identity11%Templatec3gxaA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of gna1946
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   34.....40.........50.........60.........70.........80.........90.........100.........110...
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Query Sequence  GRLDIIAWPGYIERGQTDKQYDWVTQFEKETGCAVNVKTAATSDEMVSLMTKGGYDLVTASGDASLRLIMGKRVQPINTA
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Template Sequence  KEIVFGTTVG. . . . DFGDMVKEQIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDI. . .
Template Known Secondary structure 
TT....TTTT
SSSSTS
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   43......50.. .......60.........70.........80.........90.........100.........110.....
 
   114.....120.........130.........140.........150.........160.........170.........180.........190...
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Query Sequence  LIPNWKTLDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPPDSWQVVFVEQNLPDGKSNKGRVQAYDGPIYIAD
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . TEVFQVPTAPLGLYPGK. . . . . . LKSLEEVKD. . . . . . . . GSTVSAPNDPSNFARVL
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B


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GGG

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   116...120.........130.. .......140. ........150........
 
   194.....200.........210.........220.........230.........240.........250.........260.........270...
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Query Sequence  AALFVKATQPQLGISDPYQLTEEQYQAVLKVLRAQHSLIHRYWHDTTVQMSDFKNEGVVASSAWPYQANALKAEGQPVAT
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Template Sequence  VMLDELGWIKLKDGINPLTASKADIA. . . . . . . . . ENLKNIKIVELEAAQLPRSRADVDFAVVNGNYAISSGMKLTEALF
Template Known Secondary structure  TTSS
TT

GGG

GGG.........
TT


GGGTTTSS
TT

GGG
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   159160.........170.........180.... .....190.........200.........210.........220.........
 
   274.....280.........290.........300.........310.........320
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Query Sequence  VFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFG
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Template Sequence  QEPSFA. . . YVNWSAVKTADKDSQWLKDVTEAYNSDAFKAYAHKRFE
Template Known Secondary structure 



T...T

GGGTT
TTSST
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   230..... ....240.........250.........260.........270...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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