Job Description P76108 Confidence 99.91% Date Thu Jan 5 12:19:01 GMT 2012 Rank 69 Aligned Residues 302 % Identity 9% Template c3cg3A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein ph0151; PDBTitle: crystal structure of p. horikoshii periplasmic binding2 protein moda/wtpa with bound tungstate Resolution 1.80 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																													.	.															.							.
Query SS confidence																																													.	.															.							.
Query Sequence		K	P	E	G	R	L	D	I	I	A	W	P	G	Y	I	E	R	G	Q	T	D	K	Q	Y	D	W	V	T	Q	F	E	K	E	T	G	C	A	V	N	V	K	T	A	.	.	A	T	S	D	E	M	V	S	L	M	T	K	G	G	.	Y	D	L	V	T	A	.	S	G	D	A	S	L	R	L	I	M	G	K	R
Query Conservation																																													.	.															.							.
Alig confidence													.																																.	.															.							.
Template Conservation													.
Template Sequence		S	R	E	A	R	L	I	I	F	H	A	.	G	S	L	S	I	P	L	S	Q	V	E	E	K	F	T	K	Y	A	Q	E	K	L	G	V	K	V	T	F	Q	D	E	A	S	G	S	V	K	A	V	R	K	V	T	D	L	K	K	R	A	D	I	V	A	V	A	D	Y	T	L	I	P	Q	L	M	I	P	N	Y
Template Known Secondary structure													.	G	G	G																																									T	S					S					S	S	T	T						T	T	T	T	T
Template Predicted Secondary structure													.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	P	I	N	T	A	L	I	P	N	W	K	T	L	D	P	R	V	V	K	G	D	W	F	N	V	G	G	K	V	Y	G	T	P	Y	Q	W	G	P	N	L	L	M	Y	N	T	K	T	F	P	T	P	P	D	S	W	Q	V	V	F	V	E	Q	N	L	P	D	G	K	S	N	K	G	R	V	Q	A	Y	D
Query Conservation
Alig confidence																																																												.	.
Template Conservation																																																												.	.
Template Sequence		T	D	F	Y	V	L	F	A	T	N	E	I	V	I	A	F	T	N	K	S	K	Y	A	D	E	M	L	K	N	P	D	K	W	Y	E	I	L	S	R	P	D	V	S	F	G	F	S	D	P	N	Q	D	P	C	G	Y	R	S	.	.	V	M	V	M	K	L	A	E	L	Y	Y	G	R	P	I	F	K	E	L	V
Template Known Secondary structure			S																T	T	S	T	T								G	G	G					T	T		T	T								T	T	T								.	.													S							T
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.							260
Predicted Secondary structure																																																																											.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.
Query Sequence		G	P	I	Y	I	A	D	A	A	L	F	V	K	A	T	Q	P	Q	L	G	I	S	D	P	Y	Q	L	T	E	E	Q	Y	Q	A	V	L	K	V	L	R	A	Q	H	S	L	I	H	R	Y	W	H	D	T	T	V	Q	M	S	D	F	K	N	E	G	V	V	A	S	S	A	W	P	Y	.	.	.	.	.	.	Q
Query Conservation																																																																											.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.																												.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.
Template Sequence		E	K	T	T	N	I	Y	S	N	G	T	R	I	Y	A	P	K	E	I	I	I	K	D	K	R	V	I	M	R	P	K	E	T	D	L	V	G	L	V	E	S	.	.	.	.	.	G	S	L	D	Y	I	F	I	Y	K	S	V	A	K	Q	H	H	L	S	Y	I	T	L	P	D	D	I	N	L	G	D	F	N	K
Template Known Secondary structure		T	T	T	B	S					T	T						S	S			B	S	S	T	T					S	S	T									T	.	.	.	.	.	T	S	S													T	T								T	T	T	S	S			G	G	G
Template Predicted Secondary structure																																											.	.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.						.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		A	N	A	L	K	A	E	G	Q	P	V	A	T	V	F	P	K	E	G	V	T	G	W	A	D	T	T	M	L	H	S	E	A	K	H	P	V	C	A	Y	K	W	M	N	W	S	L	T	P	K	V	Q	G	D	V	A	A	W	F	G	S	L	P	V	V	P	E	.	G	C	K	A	S	P	L	L	G	E	K	G
Query Conservation																																																																					.
Alig confidence																																																												.									.
Template Conservation																																																												.
Template Sequence		A	D	F	Y	G	R	V	S	I	T	L	G	S	T	G	K	T	I	K	A	K	P	I	V	Y	G	I	T	V	L	K	N	A	P	N	R	E	L	A	I	E	F	L	R	F	L	L	G	N	E	G	R	K	I	F	E	D	N	.	Y	Q	E	F	L	S	P	P	V	A	F	G	N	V	P	P	E	I	R	R	L
Template Known Secondary structure						T	T						T	T	T																	T	T		T	T													S										T	.	T												S			G	G	G	T	T	T
Template Predicted Secondary structure																																																												.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		336	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions