Job Description P76108 Confidence 99.95% Date Thu Jan 5 12:19:01 GMT 2012 Rank 65 Aligned Residues 279 % Identity 10% Template c3cfzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein mj1186; PDBTitle: crystal structure of m. jannaschii periplasmic binding2 protein moda/wtpa with bound tungstate Resolution 1.70 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																																.																								.							.
Query SS confidence																																.																								.							.
Query Sequence		R	L	D	I	I	A	W	P	G	Y	I	E	R	G	Q	T	D	K	Q	Y	D	W	V	T	Q	F	E	K	E	T	.	G	C	A	V	N	V	K	T	A	A	T	S	D	E	M	V	S	L	M	T	K	G	G	.	Y	D	L	V	T	A	.	S	G	D	A	S	L	R	L	I	M	G	K	R	V	Q	P	I	N
Query Conservation																																.																								.							.
Alig confidence											.	.	.																			.																								.							.
Template Conservation											.	.	.
Template Sequence		K	I	V	L	K	I	F	H	A	.	.	.	G	S	L	S	V	P	F	E	E	Y	E	K	M	F	E	K	E	H	P	N	V	D	V	E	R	E	P	A	G	S	V	A	C	V	R	K	I	I	D	L	G	K	K	A	D	I	L	A	S	A	D	Y	S	L	I	P	Q	M	M	M	P	K	Y	A	D	W	Y	V
Template Known Secondary structure											.	.	.	G	G	G																T	T																			T	S					S					S	S	T	T						T	T	T	T	T		S
Template Predicted Secondary structure											.	.	.
Template SS confidence
		37	.	.	40	.	.	.	.	.				.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	L	I	P	N	W	K	T	L	D	P	R	V	V	K	G	D	W	F	N	V	G	G	K	V	Y	G	T	P	Y	Q	W	G	P	N	L	L	M	Y	N	T	K	T	F	P	T	P	P	D	S	W	Q	V	V	F	V	E	Q	N	L	P	D	G	K	S	N	K	G	R	V	Q	A	Y	D	G	P	I	Y	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	F	A	R	N	E	I	V	L	A	Y	T	D	K	S	K	Y	K	D	E	I	N	S	T	N	W	Y	K	I	L	Q	R	P	D	V	K	I	G	F	S	N	P	N	D	D	P	C	G	Y	R	T	Q	M	V	L	Q	L	A	E	L	Y	Y	K	D	P	T	I	Y	D	N	L	V	L	K	H	S	N	I	K	V
Template Known Secondary structure														T	T	S	T	T	T	T	T			T	T	T					T	T	S	T	T								T	T	T																			T		T	T						T	G	G	G	B	S
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		A	D	A	A	L	F	V	K	A	T	Q	P	Q	L	G	I	S	D	P	Y	.	Q	L	T	E	E	Q	Y	Q	A	V	L	K	V	L	R	A	Q	H	S	L	I	H	R	Y	W	H	D	T	T	V	Q	M	S	D	F	K	N	E	G	V	V	A	S	S	A	W	P	Y	Q	A	N	A	L	K	A	E	G	Q	P
Query Conservation																						.
Alig confidence																						.																												.	.	.	.	.
Template Conservation																																																		.	.	.	.	.
Template Sequence		E	E	N	N	G	T	Y	L	I	L	V	P	K	E	L	D	V	D	T	N	K	L	F	V	R	S	K	E	T	D	L	L	A	P	L	E	A	G	A	F	D	Y	L	F	I	Y	K	S	.	.	.	.	.	V	A	N	Q	H	H	L	K	Y	I	E	L	P	K	E	I	N	L	G	Y	Y	E	Y	A	D	T	Y
Template Known Secondary structure					T	T								S	S			B		T	T	T					S	S	G	G	G	G						T	T	S	S	S								.	.	.	.	.					T	T								T	T	T	S	S			G	G	G
Template Predicted Secondary structure																																																		.	.	.	.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.						.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		271	.	.	.	.	.							.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.
Query Sequence		V	A	T	V	F	P	.	.	.	.	.	.	K	E	G	V	T	G	W	A	D	T	T	M	L	H	S	E	A	K	H	P	V	C	A	Y	K	W	M	N	W	S	L	T	P	K	V	Q	G	D	V	A	A	W	F	G	S	L	P	V
Query Conservation								.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.																																			.	.	.
Template Conservation																																																.	.	.
Template Sequence		K	K	V	A	L	K	I	I	A	K	N	K	T	I	N	A	K	P	I	V	Y	G	M	T	V	P	T	N	A	P	H	K	K	E	A	I	E	F	V	K	F	V	L	G	H	P	.	.	.	E	V	L	E	N	N	G	Q	P	A	I
Template Known Secondary structure		T	T						G	G	G	T																T	T		T	T															T	.	.	.					T	T	T			B
Template Predicted Secondary structure																																																.	.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.				.	.	.	.	.	320	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions