Job Description P76108 Confidence 100.00% Date Thu Jan 5 12:19:01 GMT 2012 Rank 47 Aligned Residues 318 % Identity 13% Template c3c9hB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of the substrate binding protein of the abc2 transporter from agrobacterium tumefaciens Resolution 1.90 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.					.	.	.	.	.	.	90	.	.	.			.	.	.	.
Predicted Secondary structure																																										.																				.	.	.	.											.	.
Query SS confidence																																										.																				.	.	.	.											.	.
Query Sequence		P	P	T	N	L	D	K	P	E	G	R	L	D	I	I	A	W	P	G	Y	I	E	R	G	Q	T	D	K	Q	Y	D	W	V	T	Q	F	E	K	E	T	.	G	C	A	V	N	V	K	T	A	A	T	S	D	E	M	V	S	L	M	.	.	.	.	T	K	G	G	Y	D	L	V	T	A	.	.	S	G	D	A
Query Conservation																																										.																				.	.	.	.											.	.
Alig confidence																					.	.	.	.	.	.																.																				.	.	.	.											.	.
Template Conservation																					.	.	.	.	.	.
Template Sequence		P	A	L	S	G	K	T	D	A	Q	T	L	V	V	Y	S	S	L	D	.	.	.	.	.	.	E	P	L	A	T	P	M	I	E	G	F	Q	K	A	N	P	D	I	A	V	H	Y	E	D	M	L	T	G	E	I	Y	D	R	I	V	K	E	T	D	A	G	K	K	T	A	D	F	A	F	S	S	A	M	D	L
Template Known Secondary structure				T	T			T	T										S		.	.	.	.	.	.																T	T																							T	T			B		S					S
Template Predicted Secondary structure																					.	.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.							.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		S	L	R	L	I	M	G	K	R	V	Q	P	I	N	T	A	L	I	P	N	W	K	T	L	D	P	R	V	V	K	G	D	W	F	N	V	G	G	K	V	Y	G	T	P	Y	Q	W	G	P	N	L	L	M	Y	N	T	K	T	F	P	.	.	T	P	P	D	S	W	Q	V	V	F	V	E	Q	N	L	P	D	G
Query Conservation																																																														.	.
Alig confidence																							.	.	.	.	.	.	.	.	.																.	.														.	.
Template Conservation																							.	.	.	.	.	.	.	.	.																.	.
Template Sequence		Q	V	K	L	S	N	D	G	Y	A	Q	R	S	D	L	A	M	S	A	R	W	.	.	.	.	.	.	.	.	.	P	A	W	A	N	W	R	N	T	A	Y	A	L	T	F	.	.	E	P	A	V	F	V	Y	H	K	P	S	F	T	T	E	K	P	P	A	T	R	A	E	F	V	D	Y	L	E	R	H	A	K
Template Known Secondary structure								T	T	S							T	T	G	G	G	S	.	.	.	.	.	.	.	.	.		G	G	G			T	T	T					B		.	.									G	G	G		S	S	S					S											T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.																.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.										120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	N	K	G	R	V	Q	A	Y	D	G	P	I	Y	I	A	D	A	A	L	F	V	K	A	T	Q	P	Q	L	G	I	S	D	P	Y	Q	L	T	E	E	Q	Y	Q	A	V	L	K	V	L	R	A	Q	H	S	L	I	H	R	Y	W	H	D	T	T	V	Q	M	S	D	F	K	N	E	G	V	V	A	S	S
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	H	G	R	I	A	T	Y	D	I	E	R	S	G	V	G	F	L	F	M	S	R	D	Q	E	Q	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	I	W	S	V	I	K	A	M	G	A	A	G	V	K	V	Y	S	T	S	S	A	I	L	E	R	V	S	D	G	R	F	V	L	G	Y
Template Known Secondary structure				T	T							T	T	T																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T											T	T					S											T	T	S		S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.																.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		256	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		A	W	P	Y	Q	A	N	A	L	K	A	E	.	G	Q	P	V	A	T	V	F	P	K	E	G	V	T	G	W	A	D	T	T	M	L	H	S	E	A	K	H	P	V	C	A	Y	K	W	M	N	W	S	L	T	P	K	V	Q	G	D	V	A	A	W	F	G	S	L	P	V	V	P	E	G	C	K	A	S	P	L
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence		N	I	L	G	S	Y	A	A	D	W	A	S	R	H	P	D	V	G	I	V	L	P	K	D	Y	T	V	V	M	S	R	I	G	L	V	P	E	A	A	A	N	P	E	L	G	R	R	Y	L	E	F	F	M	S	K	E	G	Q	T	I	M	A	R	Q	L	Q	I	P	A	V	S	P	E	V	A	G	E	N	T	A
Template Known Secondary structure													T	T		T	T							S	S													T	T	B	S	S													S											S				B			T	T			S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	E	K	G	C	E	T	N	G	F	N	Y	F	D	K	I	A	F	W	K	T	P	I	A	E	G	G	K	F	V	P	Y	S	R	W	T	Q	D	Y	I	A	I	M
Query Conservation
Alig confidence																												.	.	.	.
Template Conservation																												.	.	.	.
Template Sequence		N	T	M	Q	A	I	H	G	A	Q	L	R	P	V	P	V	S	P	G	L	M	V	Y	L	D	Q	.	.	.	.	V	K	R	S	R	L	I	E	R	W	N	E	A	L
Template Known Secondary structure									G	G	G						S	T	T	G	G	G	G	S				.	.	.	.
Template Predicted Secondary structure																												.	.	.	.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.					.	340	.	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions