Job Description P76108 Confidence 100.00% Date Thu Jan 5 12:19:01 GMT 2012 Rank 39 Aligned Residues 340 % Identity 13% Template c2z8fB_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:galacto-n-biose/lacto-n-biose i transporter substrate- PDBTitle: the galacto-n-biose-/lacto-n-biose i-binding protein (gl-bp) of the2 abc transporter from bifidobacterium longum in complex with lacto-n-3 tetraose Resolution 1.65 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.						.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																					.											.	.	.	.	.														.
Query SS confidence																																					.											.	.	.	.	.														.
Query Sequence		D	K	P	E	G	R	L	D	I	I	A	W	P	G	Y	I	E	R	G	Q	T	D	K	Q	Y	D	W	V	T	Q	F	E	K	E	T	.	G	C	A	V	N	V	K	T	A	A	.	.	.	.	.	T	S	D	E	M	V	S	L	M	T	K	G	G	.	Y	D	L	V	T	A	S	G	D	A	S	L	R	L	I
Query Conservation																																					.											.	.	.	.	.														.
Alig confidence																																					.											.	.	.	.	.														.
Template Conservation
Template Sequence		T	D	D	G	G	V	V	N	I	T	Y	M	H	R	L	P	D	S	E	G	M	T	L	V	N	D	I	V	A	K	W	N	K	Q	H	P	D	I	Q	V	K	A	T	K	F	D	G	K	A	S	D	M	I	K	K	L	E	T	D	V	K	S	G	E	A	P	D	L	A	Q	V	G	Y	A	E	L	P	E	V	F
Template Known Secondary structure						S														T	T	S															T	T									S	S		G	G	G												T				S						T	T	T
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.						.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.
Query Sequence		M	G	K	R	V	Q	P	I	N	T	A	L	I	P	N	W	K	T	L	D	P	R	V	V	K	G	D	W	F	N	V	G	G	K	V	Y	G	T	P	Y	Q	W	G	P	N	L	L	M	Y	N	T	K	T	F	P	.	.	.	.	.	T	P	P	D	S	W	Q	V	V	F	V	E	Q	N	L	P	D	G	K	S
Query Conservation																																																									.	.	.	.	.
Alig confidence																												.	.																												.	.	.	.	.
Template Conservation																												.	.
Template Sequence		T	K	G	L	L	Q	D	V	T	Q	Y	A	E	Q	Y	K	N	D	F	A	S	G	P	Y	S	L	.	.	V	Q	V	G	G	K	A	Y	G	L	P	Q	D	T	G	P	L	V	Y	F	Y	N	K	A	E	F	E	K	L	G	I	T	E	I	P	Q	T	A	D	E	F	I	A	A	A	K	T	A	A	A	A	G
Template Known Secondary structure			T	T		B											G	G	G	B							T	.	.	T			T	T											B													T	T			S				B														T	T
Template Predicted Secondary structure																												.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																																		.																													.	.
Query SS confidence																																		.																													.	.
Query Sequence		N	K	G	R	V	Q	A	Y	D	G	P	I	Y	I	A	D	A	A	L	F	V	K	A	T	Q	P	Q	L	G	I	S	D	.	P	Y	Q	L	T	E	E	Q	Y	Q	A	V	L	K	V	L	R	A	Q	H	S	L	I	H	R	Y	W	H	.	.	D	T	T	V	Q	M	S	D	F	K	N	E	G	V	V	A	S
Query Conservation																																		.																													.	.
Alig confidence																																		.																													.	.
Template Conservation
Template Sequence		K	Y	I	M	S	Y	Q	P	D	E	A	G	N	M	I	S	G	L	A	G	A	S	G	G	W	Y	K	V	K	G	D	S	W	V	V	N	T	E	T	D	G	S	K	A	T	A	D	F	Y	Q	Q	L	L	D	A	K	A	A	T	T	N	P	R	W	D	P	S	F	D	A	S	I	K	D	G	S	L	I	G	T
Template Known Secondary structure			B	S		B			G	G	G	T	T	T								T	T			S					T	T																								T	T		S	B				T	T	S									T	T		B
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.						270	.	.	.	.	.	.	.	.	.								280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure																	.	.	.	.	.											.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.											.	.	.	.	.	.	.
Query Sequence		S	A	W	P	Y	Q	A	N	A	L	K	A	E	G	Q	.	.	.	.	.	P	V	A	T	V	F	P	K	E	G	.	.	.	.	.	.	.	V	T	G	W	A	D	T	T	M	L	H	S	E	A	K	H	P	V	C	A	Y	K	W	M	N	W	S	L	T	P	K	V	Q	G	D	V	A	A	W	F	G	S	L
Query Conservation																	.	.	.	.	.											.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.											.	.	.	.	.	.	.																																		.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		V	A	A	A	W	E	A	P	L	F	M	T	S	S	G	G	T	G	S	G	E	W	Q	V	A	Q	L	G	D	W	F	G	N	A	G	K	T	G	P	D	G	G	S	A	V	A	V	L	K	N	S	K	H	P	K	E	A	M	E	F	L	D	W	F	N	T	Q	V	P	D	.	.	.	L	V	S	Q	G	L	V
Template Known Secondary structure					G	G	G								T	T	T	T	T	T	T	T								B		S	S		T	T		B		B									B	T	T		S														T					.	.	.				T	T
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.				.	.	.	.	.	.	350
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	V	P	E	G	C	K	A	S	P	L	L	G	E	K	G	C	E	T	N	G	F	N	Y	F	D	K	I	A	F	W	K	T	P	I	A	E	G	G	K	F	V	P	Y	S	R	W	T	Q	D	Y	I	A
Query Conservation
Alig confidence																					.	.
Template Conservation																					.	.
Template Sequence		P	A	A	T	T	E	D	A	E	T	P	S	E	W	S	T	F	F	G	.	.	G	Q	D	I	M	K	E	F	K	T	A	N	N	N	M	G	D	F	T	Y	M	P	G	F	S	A	V	A	A	K	M	N	E
Template Known Secondary structure			S	B		S	S												T	T	.	.	T													T	B							T	T
Template Predicted Secondary structure																					.	.
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.			370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions