Job Description P76108 Confidence 100.00% Date Thu Jan 5 12:19:01 GMT 2012 Rank 45 Aligned Residues 342 % Identity 13% Template c2w7yA_ PDB info PDB header:sugar-binding protein Chain: A: PDB Molecule:probable sugar abc transporter, sugar-binding PDBTitle: structure of a streptococcus pneumoniae solute-binding2 protein in complex with the blood group a-trisaccharide. Resolution 2.35 Å

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		37	.	.	40	.	.	.	.					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.																					.													.	.												.														.
Query SS confidence										.	.	.	.																					.													.	.												.														.
Query Sequence		D	I	I	A	W	P	G	Y	.	.	.	.	I	E	R	G	Q	T	D	K	Q	Y	D	W	V	T	Q	F	E	K	E	T	.	G	C	A	V	N	V	K	T	A	A	T	S	.	.	D	E	M	V	S	L	M	T	K	G	G	.	Y	D	L	V	T	A	S	G	D	A	S	L	R	.	L	I	M	G	K	R	V
Query Conservation										.	.	.	.																					.													.	.												.														.
Alig confidence										.	.	.	.																					.													.	.												.														.
Template Conservation
Template Sequence		V	L	E	F	Y	H	G	Y	H	H	S	E	D	E	W	P	V	A	K	T	X	R	D	L	Y	D	K	F	A	E	E	H	S	G	V	E	F	K	P	T	P	V	N	G	D	L	K	D	I	X	N	N	K	V	A	S	G	E	F	P	D	V	I	D	L	A	G	N	A	V	S	L	A	A	I	E	Q	K	L	V
Template Known Secondary structure								S					T	T	T																					S								S	S											T	T	T				S					T	T										T	T		B
Template Predicted Secondary structure
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.								.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																																																				.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.
Query Sequence		Q	P	I	N	T	A	L	I	P	N	W	K	T	L	D	P	R	V	V	K	G	D	W	F	N	V	G	G	K	V	Y	G	T	P	Y	Q	W	G	P	N	L	L	M	Y	N	T	K	T	F	P	.	.	.	.	.	.	.	T	P	P	D	S	W	Q	V	V	F	V	E	Q	N	L	P	D	G	K	S	N	K	G
Query Conservation																																																				.	.	.	.	.	.	.
Alig confidence															.																																					.	.	.	.	.	.	.
Template Conservation															.
Template Sequence		L	D	L	K	P	Y	I	D	S	N	K	L	E	.	K	N	V	G	L	N	Y	K	Q	N	Q	K	D	G	K	I	Y	T	V	H	E	Q	L	F	T	X	G	L	W	Y	N	K	D	I	F	A	K	A	G	A	K	T	P	D	Q	W	N	T	W	D	D	F	T	Q	A	X	A	S	I	R	K	Q	D	G	V	Y
Template Known Secondary structure											T	T			.				T	T					T			T	T					B		S	B																	T				G	G	G			S													T	S	S	S
Template Predicted Secondary structure															.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.			.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																				.	.																																								.	.
Query SS confidence																				.	.																																								.	.
Query Sequence		R	V	Q	A	Y	D	G	P	I	Y	I	A	D	A	A	L	F	V	.	.	K	A	T	Q	P	Q	L	G	I	S	D	P	Y	Q	L	T	E	E	Q	Y	Q	A	V	L	K	V	L	R	A	Q	H	S	L	I	H	R	Y	W	H	.	.	D	T	T	V	Q	M	S	D	F	K	N	E	G	V	V	A	S	S	A
Query Conservation																				.	.																																								.	.
Alig confidence																				.	.																																								.	.
Template Conservation
Template Sequence		A	F	G	A	G	E	P	S	I	R	L	F	N	T	V	L	G	T	T	E	N	G	R	K	L	L	D	K	P	L	T	K	E	G	I	E	S	K	E	F	A	D	A	L	K	X	V	X	K	E	I	Q	A	N	G	S	K	N	A	G	G	D	A	N	A	Y	S	K	D	F	Q	E	G	K	S	A	V	F	F	N
Template Known Secondary structure						B	T	T										T	T	S							T	T	S				T	T	T	T	T	S																	T		G	G	G		S	B											T	T	S
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		W	P	Y	Q	A	N	A	L	K	A	E	G	Q	P	V	A	T	V	F	P	K	E	G	.	.	.	V	T	G	W	A	D	T	T	M	L	H	S	E	A	K	H	P	V	C	A	Y	K	W	M	N	W	S	L	T	P	K	V	Q	G	D	V	A	A	W	F	G	S	L	P	V	V	P	E	G	C	K	A	S	P
Query Conservation																									.	.	.
Alig confidence																									.	.	.
Template Conservation
Template Sequence		G	V	W	A	S	G	E	X	S	K	N	P	S	L	A	P	G	I	Y	P	A	G	V	A	I	S	S	S	G	G	G	I	T	I	S	S	K	X	S	E	A	K	Q	K	L	A	L	E	F	L	K	Y	X	T	S	D	D	V	Q	K	V	I	F	E	K	V	G	A	N	P	S	N	E	N	V	N	V	K	E	L
Template Known Secondary structure			G	G	G					T	T	S	T	T						B	G	G	G													B	S	S	S																T	S										T	S		S		B	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	G	E	K	G	C	E	T	N	G	F	N	Y	F	D	K	I	A	F	W	K	T	P	I	A	E	G	G	K	F	V	P	Y	S	R	W	T	Q	D	Y	I	A	I	M	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	E	K	S	S	E	A	T	T	K	I	L	G	Q	A	I	T	Q	V	K	N	A	K	A	V	V	P	T	V	S	D	V	W	G	G	D	V	H	T	A	I	I	N	A	L	T
Template Known Secondary structure				T																		T		S
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions