Job Description P76108 Confidence 100.00% Date Thu Jan 5 12:19:01 GMT 2012 Rank 42 Aligned Residues 343 % Identity 13% Template c2uvgA_ PDB info PDB header:sugar-binding protein Chain: A: PDB Molecule:abc type periplasmic sugar-binding protein; PDBTitle: structure of a periplasmic oligogalacturonide binding2 protein from yersinia enterocolitica Resolution 2.2 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.				.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.													.	.	.												.
Query SS confidence																																.													.	.	.												.
Query Sequence		R	L	D	I	I	A	W	P	G	Y	I	E	R	G	Q	T	D	K	Q	Y	D	W	V	T	Q	F	E	K	E	T	.	G	C	A	V	N	V	K	T	A	A	T	S	.	.	.	D	E	M	V	S	L	M	T	K	G	G	.	Y	D	L	V	T	A	S	G	D	A	S	L	R	L	I	M	G	K	R	V	Q	P
Query Conservation																																.													.	.	.												.
Alig confidence											.	.	.																			.													.	.	.												.
Template Conservation											.	.	.
Template Sequence		N	L	R	M	S	W	W	G	G	.	.	.	N	G	R	H	E	V	T	L	K	A	L	E	E	F	H	K	E	H	P	N	I	N	V	K	A	E	Y	T	G	W	D	G	H	L	S	R	L	T	T	Q	I	A	G	G	T	E	P	D	V	M	Q	T	N	W	N	W	L	P	I	F	S	K	D	G	T	G	F	Y
Template Known Secondary structure											.	.	.																			T	T										S	T	T											T	T				S						T	T							T	T	S		S	B
Template Predicted Secondary structure											.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.					.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.
Query SS confidence																																																		.	.	.	.
Query Sequence		I	N	T	A	L	I	P	N	W	K	T	L	D	P	R	V	V	K	G	D	W	F	N	V	G	G	K	V	Y	G	T	P	Y	Q	W	G	P	N	L	L	M	Y	N	T	K	T	F	P	.	.	.	.	T	P	P	D	S	W	Q	V	V	F	V	E	Q	N	L	P	D	G	K	S	N	K	G	R	V	Q	A	Y
Query Conservation																																																		.	.	.	.
Alig confidence																																																		.	.	.	.
Template Conservation
Template Sequence		N	L	F	S	V	K	E	Q	L	D	L	A	Q	F	D	P	K	E	L	Q	Q	T	T	V	N	G	K	L	N	G	I	P	I	S	V	T	A	R	I	F	Y	F	N	D	A	T	W	A	K	A	G	L	E	Y	P	K	T	W	D	E	L	L	A	A	G	Q	V	F	K	E	K	L	G	D	Q	Y	Y	P	V	V
Template Known Secondary structure			G	G	G	G	T	T	T	S		G	G	G	S								T			T	T																									T					S	S															T		T	T		B	S		B
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		186	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.								.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure							.	.	.	.																																																.	.	.	.	.	.	.
Query SS confidence							.	.	.	.																																																.	.	.	.	.	.	.
Query Sequence		D	G	P	I	Y	.	.	.	.	I	A	D	A	A	L	F	V	K	A	T	Q	P	Q	L	G	I	S	D	P	Y	Q	L	T	E	E	Q	Y	Q	A	V	L	K	V	L	R	A	Q	H	S	L	I	H	R	Y	W	H	.	.	.	.	.	.	.	D	T	T	V	Q	M	S	D	F	K	N	E	G	V	V	A	S
Query Conservation							.	.	.	.																																																.	.	.	.	.	.	.
Alig confidence							.	.	.	.																																																.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	H	Q	D	T	L	A	L	I	R	S	Y	M	T	Q	K	Y	N	I	P	T	I	D	E	A	N	K	K	F	A	Y	S	P	E	Q	W	V	E	F	F	T	M	Y	K	T	M	V	D	N	H	V	M	P	S	T	K	Y	Y	A	S	F	G	K	S	N	M	Y	E	M	K	P	W	N	G	E	W	A	G	T
Template Known Secondary structure																							S			T	T	T	T																						T	T	S	S								T	T		S	S		G	G	G	S	T	T				S	B
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.				.	.	270	.	.	.	.	.	.	.	.	.									280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure															.	.	.													.	.	.	.	.	.	.	.
Query SS confidence															.	.	.													.	.	.	.	.	.	.	.
Query Sequence		S	A	W	P	Y	Q	A	N	A	L	K	A	E	.	.	.	G	Q	P	V	A	T	V	F	P	K	E	G	.	.	.	.	.	.	.	.	V	T	G	W	A	D	T	T	M	L	H	S	E	A	K	H	P	V	C	A	Y	K	W	M	N	W	S	L	T	P	K	V	Q	G	D	V	A	A	W	F	G	S	L	P
Query Conservation															.	.	.													.	.	.	.	.	.	.	.
Alig confidence															.	.	.													.	.	.	.	.	.	.	.																																										.
Template Conservation																																																																															.
Template Sequence		Y	M	W	N	S	T	I	T	K	Y	S	D	N	L	T	K	P	A	K	L	V	L	G	P	Y	P	M	L	P	G	A	K	D	A	G	L	F	F	K	P	A	Q	M	L	S	I	G	K	S	T	K	H	P	Q	E	S	A	M	L	I	N	F	L	L	N	S	K	E	G	V	E	L	G	L	E	R	G	.	V	P
Template Known Secondary structure					G	G	G							T	S		T	T												T	T		S															B	S			S															S							T	T	T	T	S	.	S	B
Template Predicted Secondary structure																																																																															.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.		.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.				.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		V	V	P	E	G	C	K	A	S	P	L	L	G	E	K	G	C	E	T	N	G	F	N	Y	F	D	K	I	A	F	W	K	T	P	I	A	E	G	G	K	F	V	P	.	.	.	Y	S	R	W	T	Q	D	Y	I	A	I	M	G	G	R
Query Conservation																																													.	.	.
Alig confidence																																													.	.	.
Template Conservation
Template Sequence		L	S	A	T	A	V	T	Q	L	R	A	S	G	V	I	K	D	E	D	P	S	V	A	G	L	N	M	A	L	E	L	P	H	K	M	T	T	S	P	Y	F	D	D	P	Q	I	V	S	L	F	G	D	A	I	Q	Y	I	D	Y	G	Q
Template Known Secondary structure			S										T	T		S		S	S	S												S								G	G	G	G																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions