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Job DescriptionP76108
Confidence100.00%DateThu Jan 5 12:19:01 GMT 2012
Rank17Aligned Residues327
% Identity16%Templatec2nvuB_
PDB info PDB header:protein turnover, ligaseChain: B: PDB Molecule:maltose binding protein/nedd8-activating enzyme PDBTitle: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a2 trapped ubiquitin-like protein activation complex
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........40.........50.........60.........70...... ...80....... ..90.........100........
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Query Sequence  KPEGRLDIIAWPGYIERGQTDKQYDWVTQFEKETGCAVNVKTAATS. DEMVSLMTKGG. YDLVTASGDASLRLIMGKRVQ
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Template Sequence  IEEGKLVIWINGD. . . . KGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLA
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TTS

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TTSS
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STT
B
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   1003......1010..... ....1020.........1030.........1040.........1050.........1060.........1070........
 
   109110.........120.........130.........140.........150.........160.........170.........180........
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Query Sequence  PINTALIPNWKTLDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPPDSWQVVFVEQNLPDGKSNKGRVQAYDGP
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Template Sequence  EITPD. KAFQDKLYPFTWD. . AVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEP
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.TSB
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SBSTTTTT




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   10791080... ......1090...... ...1100.........1110.........1120.........1130.........1140.........1150.....
 
   189190.........200......... 210.........220.........230....... ..240.........250.........260...
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Query Sequence  IYIADAALFVKATQPQLGISD. . . . PYQLTEEQYQAVLKVLRAQHSLIHRYWH. DTTVQMSDFKNEGVVASSAWPYQANA
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Template Sequence  YFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSN
Template Known Secondary structure  TT

SSSTSSSSS

TT

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   1156...1160.........1170.........1180.........1190.........1200.........1210.........1220.........1230.....
 
   264.....270....... ..280.........290.........300.... .....310.........320.........330......
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Query Sequence  LKAEGQPVATVFPK. . . . . . EGVTGWADTTMLHSEAKHPVCAYKWMN. WSLTPKVQGDVAAWFGSLPVVPEGCKASPLLG
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Template Sequence  IDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKVALKSYEE. . . . . . . . .
Template Known Secondary structure  TTTTT




B


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BSS
STTTTTSSTT


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   1236...1240.........1250.........1260.........1270.........1280.........1290.........1300......
 
   337..340.........350.........360.........370.........380.
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Query Sequence  EKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSRWTQDYIAIMGGR
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Template Sequence  . . . . . . . . EATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGR
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B


STTTTS
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   1311........1320.........1330.........1340.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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