Phyre 2 alignment of P76108 with c2i58B

Job Description P76108
Confidence 100.00% Date Thu Jan 5 12:19:01 GMT 2012

Rank 46 Aligned Residues 335

% Identity 15% Template c2i58B_

PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:sugar abc transporter, sugar-binding protein; PDBTitle: crystal structure of rafe from streptococcus pneumoniae complexed with2 raffinose

Resolution 2.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.													.												.										.	.
Query SS confidence																																.													.												.										.	.
Query Sequence	G	R	L	D	I	I	A	W	P	G	Y	I	E	R	G	Q	T	D	K	Q	Y	D	W	V	T	Q	F	E	K	E	T	.	G	C	A	V	N	V	K	T	A	A	T	S	.	D	E	M	V	S	L	M	T	K	G	G	.	Y	D	L	V	T	A	S	G	D	.	.	A	S	L	R	L	I	M	G	K	R	V	Q
Query Conservation																																.													.												.										.	.
Alig confidence											.	.																				.													.												.										.	.
Template Conservation											.	.
Template Sequence	S	T	V	T	I	E	Y	F	N	Q	.	.	K	K	E	M	T	K	T	L	E	E	I	T	R	D	F	E	K	E	N	P	K	I	K	V	K	V	V	N	V	P	N	A	G	E	V	L	K	T	R	V	L	A	G	D	V	P	D	V	V	N	I	Y	P	Q	S	I	E	L	Q	E	W	A	K	A	G	V	F	E
Template Known Secondary structure											.	.		G	G	G													T	T		T	T									S	S											T	T				S						T	T	S									T	T		B
Template Predicted Secondary structure											.	.
Template SS confidence
	4	.	.	.	.	.	10	.	.	.			.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

	109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.					.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.
Query SS confidence																																																		.	.	.	.
Query Sequence	P	I	N	T	A	L	I	P	N	W	K	T	L	D	P	R	V	V	K	G	D	W	F	N	V	G	G	K	V	Y	G	T	P	Y	Q	W	G	P	N	L	L	M	Y	N	T	K	T	F	P	.	.	.	.	T	P	P	D	S	W	Q	V	V	F	V	E	Q	N	L	P	D	G	K	S	N	K	G	R	V	Q	A
Query Conservation																																																		.	.	.	.
Alig confidence											.	.	.	.																																				.	.	.	.
Template Conservation											.	.	.	.
Template Sequence	D	L	S	N	K	D	Y	L	K	R	.	.	.	.	V	K	N	G	Y	A	E	K	Y	A	V	N	E	K	V	Y	N	V	P	F	T	A	N	A	Y	G	I	Y	Y	N	K	D	K	F	E	E	L	G	L	K	V	P	E	T	W	D	E	F	E	Q	L	V	K	D	I	V	A	K	G	Q	T	P	F	G	I	A
Template Known Secondary structure			T	T		S	G	G	G	G	.	.	.	.	B	G	G	G					T		B	T	T	B							B	B																T						B													T	T	T				B
Template Predicted Secondary structure											.	.	.	.
Template SS confidence
	82	.	.	.	.	.	.	.	90	.					.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.

	185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.											.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.					.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Query Sequence	Y	D	G	P	I	Y	I	A	D	A	A	L	F	V	K	A	T	Q	P	Q	L	G	.	.	.	.	.	.	.	.	.	.	I	S	D	P	Y	Q	L	T	E	E	Q	Y	Q	A	V	L	K	V	L	R	A	Q	H	S	L	I	H	R	Y	W	H	.	.	.	.	D	T	T	V	Q	M	S	D	F	K	N	E	G
Query Conservation																							.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Conservation
Template Sequence	G	A	D	A	W	T	L	N	G	Y	N	Q	L	A	F	A	T	A	T	G	G	G	K	E	A	N	Q	Y	L	R	Y	S	Q	P	N	A	I	K	L	S	D	P	I	M	K	D	D	I	K	V	M	D	I	L	R	I	N	G	S	K	Q	K	N	W	E	G	A	G	Y	T	D	V	I	G	A	F	A	R	G	D
Template Known Secondary structure	T	T		G	G	G	G													T	S	S								T	S	S		T	T				T	T												T	T	S	S	S	T	T		B		T	T	G	G	G													T	S
Template Predicted Secondary structure
Template SS confidence
	158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

	251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.										.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.
Query Sequence	V	V	A	S	S	A	W	P	Y	Q	A	N	A	L	K	A	E	G	Q	P	V	A	T	V	F	.	.	.	.	.	.	.	.	.	P	K	E	G	V	T	G	W	A	D	T	T	M	L	H	S	E	A	K	H	P	V	C	A	Y	K	W	M	N	W	S	L	T	P	K	V	Q	G	D	V	A	A	W	F	G	S
Query Conservation																										.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	V	L	M	T	P	N	G	S	W	A	I	T	A	I	N	E	Q	K	P	N	F	K	I	G	T	F	M	I	P	G	K	E	K	G	Q	S	L	T	V	G	A	G	D	L	A	W	S	I	S	A	T	T	K	H	P	K	E	A	N	A	F	V	E	Y	M	T	R	P	E	V	M	Q	K	Y	Y	D	V	D	G	S
Template Known Secondary structure	S	S						G	G	G							T			S	S							B		B	S	S	T	T			B					B	S	S					B	S	S		S													T	S
Template Predicted Secondary structure
Template SS confidence
	238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

	322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence	L	P	V	V	P	E	G	C	K	A	S	P	L	L	G	E	K	G	C	E	T	N	G	F	N	Y	F	D	K	I	A	F	W	K	T	P	I	A	E	G	G	K	F	V	P	Y	S	R	W	T	Q	D	Y	I	A	I	M	G	G
Query Conservation
Alig confidence																											.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.
Template Sequence	P	T	A	I	E	G	V	K	Q	A	G	E	D	S	P	L	A	G	M	T	E	Y	A	F	T	D	.	.	.	.	.	.	R	H	L	V	W	L	Q	Q	Y	W	T	S	E	A	D	F	H	T	L	T	M	N	Y	V	L	T	G
Template Known Secondary structure		B		B	T	T						T	T	S	T	T	T	T	T	T	T	T	T	T	S	T	.	.	.	.	.	.	T					G	G	G	S	S	S
Template Predicted Secondary structure																											.	.	.	.	.	.
Template SS confidence
	318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.							.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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