 |
Job Description | P0ADJ8 | Confidence | 3.68% | Date | Thu Jan 5 11:21:11 GMT 2012 |
Rank | 44 | Aligned Residues | 24 |
% Identity | 38% | Template | c3gnbA_ |
PDB info |
PDB header:recombination | Chain: A: PDB Molecule:v(d)j recombination-activating protein 1; |
PDBTitle: crystal structure of the rag1 nonamer-binding domain with dna
|
Resolution | 3.00 Å |
|
  |   |
60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | T | V | R | D | K | Y | E | G | I | P | T | T | S | I | Y | Y | M | T | C | L | T | V | F | I | I | S | V |
Query Conservation |   |
|
|
|
|
|   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |
|   |
|
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |
|
|
|
| . | . | . | . |
|
|
|
|   |
|
|
|
|
|
|
|
|
|
|
Template Sequence |   |
K | E | F | A | D | K | E | E | G | . |
. |
. |
. |
G | D | V | K | A | V | C | L | T | L | F | L | L | A | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  | T | . | . | . | . | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
| . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
416 | . | . | . | 420 | . | . | . | . | |
|
|
|
. | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|