 |
Job Description | P15042 | Confidence | 68.46% | Date | Thu Jan 5 11:34:23 GMT 2012 |
Rank | 223 | Aligned Residues | 69 |
% Identity | 20% | Template | c3s6iA_ |
PDB info |
PDB header:hydrolase/dna | Chain: A: PDB Molecule:dna-3-methyladenine glycosylase 1; |
PDBTitle: schizosaccaromyces pombe 3-methyladenine dna glycosylase (mag1) in2 complex with abasic-dna.
|
Resolution | 2.28 Å |
|
 |
  |   |
470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | |
|
|
|
Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
Query Sequence |   |
T | P | A | D | L | F | K | L | T | A | G | K | L | T | G | L | E | R | M | G | P | K | S | A | Q | N | V | V | N | A | L | E | K | A | K | E | T | T | F | A | R | F | L | Y | A | L | G | I | R | E | V | G | E | A | T | A | A | G | L | A | A | Y | F | G | T | L | E | A | L | E | A | A | S | I | E | E | . |
. |
. |
. |
Query Conservation |   |
  |   |   |
|
|
|   |
|   |   |   |   |
|   |   |
|   |
|   |
|
|
|
|
|   |
|
|   |   |   |
|   |   |
|
|   |   |   |
|   |
|   |
|   |
|
|
|
|   |   |
|
|   |   |   |
|   |   |
|
|   |   |
|   |   |
|   |   |
|   |   |
|   |   |
|   | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
Template Conservation |   |
  |
|   |   |
|   |   |   |   |   |   |   |
|
|   |   | . |
|   |   |   |   |
|
|   |   |
|   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
T | P | E | E | I | R | D | M | D | F | E | I | M | R | A | C | . |
G | F | S | A | R | K | I | D | S | L | K | S | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | E | A | T | I | S | G | L | I | P | T | K | E | E | A | E | R | L | S | N | E | E | L | I | E | R |
Template Known Secondary structure |   |
|  |  |  |  |  |  | S |
|  |  |  |  |  |  |  | . | T |
|
|  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  | T | S | S |
|
|  |  |  |  | T | T | S |
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
86 | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | |
. | . | . | . | . | . | . | . | 110 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
  |
  |   |
546 | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | Q | K | V | P | D | V | G | I | V | V | A | S | H | V | H | N | F |
Query Conservation |   |
|   |   |
|   |
|
|
|   |   |   |
|   |
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |
|
|
|   |
|
|
|   |   |
|
|
|   |
Template Sequence |   |
L | T | Q | I | K | G | I | G | R | W | T | V | E | M | L | L | I | F |
Template Known Secondary structure |   |
 | T | T | S | T | T |
|
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
141 | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|