Job Description P15042 Confidence 100.00% Date Thu Jan 5 11:34:23 GMT 2012 Rank 4 Aligned Residues 317 % Identity 62% Template c3pn1A_ PDB info PDB header:ligase/ligase inhibitor Chain: A: PDB Molecule:dna ligase; PDBTitle: novel bacterial nad+-dependent dna ligase inhibitors with broad2 spectrum potency and antibacterial efficacy in vivo Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	S	I	E	Q	Q	L	T	E	L	R	T	T	L	R	H	H	E	Y	L	Y	H	V	M	D	A	P	E	I	P	D	A	E	Y	D	R	L	M	R	E	L	R	E	L	E	T	K	H	P	E	L	I	T	P	D	S	P	T	Q	R	V	G	A	A	P	L	A	A	F	S	Q	I	R	H	E	V	P	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	T	N	I	Q	T	Q	L	D	N	L	R	K	T	L	R	Q	Y	E	Y	E	Y	H	V	L	D	N	P	S	V	P	D	S	E	Y	D	R	L	F	H	Q	L	K	A	L	E	L	E	H	P	E	F	L	T	S	D	S	P	T	Q	R	V	G	A	K	P	L	S	G	F	S	Q	I	R	H	E	I	P	M	L
Template Known Secondary structure																									T	T	S			S	S																			S	G	G	G			T	T	S	G	G	G		S		S	S			S								S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		S	L	D	N	V	F	D	E	E	S	F	L	A	F	N	K	R	V	Q	D	R	L	K	.	N	N	E	K	V	T	W	C	C	E	L	K	L	D	G	L	A	V	S	I	L	Y	E	N	G	V	L	V	S	A	A	T	R	G	D	G	T	T	G	E	D	I	T	S	N	V	R	T	I	R	A	I	P	L	K	L
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		S	L	D	N	A	F	S	D	A	E	F	N	A	F	V	K	R	I	E	D	R	L	I	L	L	P	K	P	L	T	F	C	C	E	P	K	L	D	G	L	A	V	S	I	L	Y	V	N	G	E	L	T	Q	A	A	T	R	G	D	G	T	T	G	E	D	I	T	A	N	I	R	T	I	R	N	V	P	L	Q	L
Template Known Secondary structure								S																S	S			S	S											S									T	T									T	T	S	S				B							T		T	T	S		S	B
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	E	N	I	P	A	R	L	E	V	R	G	E	V	F	L	P	Q	A	G	F	E	K	I	N	E	D	A	R	R	T	G	G	K	V	F	A	N	P	R	N	A	A	A	G	S	L	R	Q	L	D	P	R	I	T	A	K	R	P	L	T	F	F	C	Y	G	V	G	V	L	E	G	G	E	L	P	D	T	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	D	N	P	P	A	R	L	E	V	R	G	E	V	F	M	P	H	A	G	F	E	R	L	N	K	Y	A	L	E	H	N	E	K	T	F	A	N	P	R	N	A	A	A	G	S	L	R	Q	L	D	P	N	I	T	S	K	R	P	L	V	L	N	A	Y	G	I	G	I	A	E	G	V	D	L	P	T	T	H
Template Known Secondary structure		S	S	S	S			S																								T	T	T					S	S										T		S						T	T	S														S	S				S	B
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	R	L	L	Q	F	K	K	W	G	L	P	V	S	D	R	V	T	L	C	E	S	A	E	E	V	L	A	F	Y	H	K	V	E	E	D	R	P	T	L	G	F	D	I	D	G	V	V	I	K	V	N	S	L	A	Q	Q	E	Q	L	G	F	V	A	R	A	P	R	W	A	V	A	F	K	F	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	A	R	L	Q	W	L	K	S	I	G	I	P	V	N	P	E	I	R	L	C	N	G	A	D	E	V	L	G	F	Y	R	D	I	Q	N	K	R	S	S	L	G	Y	D	I	D	G	T	V	L	K	I	N	D	I	A	L	Q	N	E	L	G	F	I	S	K	A	P	R	W	A	I	A	Y	K	F	P	A
Template Known Secondary structure											T	T			B		T	T																					G	G	G	S	S	S										S	B											T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions