Job Description P15042 Confidence 99.05% Date Thu Jan 5 11:34:23 GMT 2012 Rank 21 Aligned Residues 257 % Identity 17% Template c3l2pA_ PDB info PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase 3; PDBTitle: human dna ligase iii recognizes dna ends by dynamic switching between2 two dna bound states Resolution 3.00 Å

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		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	M	L	S	L	D	N	V	F	D	E	E	S	F	L	A	F	N	K	R	V	Q	D	R	L	K	N	N	E	K	V	T	W	C	C	E	L	K	L	D	G	L	A	V	S	I	L	Y	E	N	G	V	L	V	S	A	A	T	R	G	D	G	T	T	G	E	D	I	T	S	N	V	R	T	I	R	A	I	P	L
Query Conservation
Alig confidence						.														.	.	.	.	.	.	.	.	.	.	.																								.							.	.	.	.								.	.
Template Conservation						.														.	.	.	.	.	.	.	.	.	.	.																								.							.	.	.	.								.	.
Template Sequence		P	M	L	A	.	E	A	C	K	S	V	E	Y	A	M	K	K	C	.	.	.	.	.	.	.	.	.	.	.	P	N	G	M	F	S	E	I	K	Y	D	G	E	R	V	Q	V	H	K	N	G	D	H	.	F	S	Y	F	S	R	.	.	.	.	S	L	K	P	V	L	P	.	.	H	K	V	A	H	F	K	D
Template Known Secondary structure						.														.	.	.	.	.	.	.	.	.	.	.	T	T										S									T	T		.						T	.	.	.	.	T	S		B			G	.	.	G	G	T	T	T	G	G	G
Template Predicted Secondary structure						.														.	.	.	.	.	.	.	.	.	.	.																								.							.	.	.	.								.	.
Template SS confidence
		396	.	.	.		400	.	.	.	.	.	.	.	.	.	410	.	.												.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.		.	.	.	.	440	.					.	.	.	.	.	.	.			.	450	.	.	.	.	.	.
		158	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		K	L	H	G	E	N	I	.	P	A	R	L	E	V	R	G	E	V	F	L	P	Q	A	G	F	E	K	I	N	E	D	A	R	R	T	G	G	K	V	F	A	N	P	R	N	A	A	A	G	S	L	R	Q	L	D	P	R	I	T	A	K	R	P	L	T	F	F	C	Y	G	V	G	V	L	E	G	G	E	L	P
Query Conservation									.
Alig confidence									.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	I	P	Q	A	F	P	G	G	H	S	M	I	L	D	S	E	V	L	L	I	D	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	K	P	L	P	F	G	T	L	G	V	H	K	K	A	A	F	Q	D	A	N	V	C	L	F	V	F	D	C	I	Y	F	N	D	V	S	L	M
Template Known Secondary structure		T					S	T	T		S											B		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T			B			G	G	G	G	S								S	S														T	T				T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480																		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
		237		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.						.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure			.																				.	.	.	.	.
Query SS confidence			.																				.	.	.	.	.
Query Sequence		D	.	T	H	L	G	R	L	L	Q	F	K	K	W	G	L	P	V	S	D	R	.	.	.	.	.	V	T	L	C	E	S	A	E	E	V	L	A	F	Y	H	K	V	E	E	D	R	P	T	L	G	F	D	I	D	G	V	V	I	K	V	N	S	L	A	Q	Q	E	Q	L	G	F	V	A	R	A	P	R	W	A
Query Conservation			.																				.	.	.	.	.
Alig confidence			.																				.	.	.	.	.																							.	.	.	.	.	.															.	.					.	.	.	.		.
Template Conservation																																																		.	.	.	.	.	.															.	.					.	.	.	.		.
Template Sequence		D	R	P	L	C	E	R	R	K	F	L	H	D	N	M	V	E	I	P	N	R	I	M	F	S	E	M	K	R	V	T	K	A	L	D	L	A	D	M	I	T	R	V	I	Q	E	G	L	.	.	.	.	.	.	E	G	L	V	L	K	D	V	K	G	T	Y	E	P	.	.	G	K	R	H	.	.	.	.	W	.
Template Known Secondary structure		T	S																B	T	T	T											S														T	T		.	.	.	.	.	.								S	S					T	.	.	T				.	.	.	.		.
Template Predicted Secondary structure																																																		.	.	.	.	.	.															.	.					.	.	.	.		.
Template SS confidence
		520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.							.	.	570	.	.	.	.	.	.	.	.	.	580	.			.	.	.	.					.
		311	.	.	.	.	.	.	.							.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.			340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.															.								.	.																		.																			.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.															.								.	.																		.																			.	.	.	.	.	.
Query Sequence		V	A	F	K	F	P	A	Q	.	.	.	.	.	.	E	Q	M	T	F	V	R	D	V	E	F	Q	V	G	.	R	T	G	A	I	T	P	.	.	V	A	R	L	E	P	V	H	V	A	G	V	L	V	S	N	A	.	T	L	H	N	A	D	E	I	E	R	L	G	L	R	I	G	D	K	.	.	.	.	.	.
Query Conservation										.	.	.	.	.	.															.								.	.																		.																			.	.	.	.	.	.
Alig confidence		.	.							.	.	.	.	.	.															.								.	.																		.																			.	.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	L	K	V	K	K	D	Y	L	N	M	A	D	T	A	D	L	V	V	L	G	A	F	Y	G	Q	G	S	K	G	G	M	M	S	I	F	L	M	G	C	Y	D	P	G	S	Q	K	W	C	T	V	T	K	C	A	G	G	H	D	D	A	T	L	A	R	L	Q	N	E	L	D	M	V	K	I	S	K	A	A
Template Known Secondary structure		.	.					T	T	T																			T	T	S		S	S											T	T	T	S	S									T	T									T	T	T	S	S
Template Predicted Secondary structure		.	.
Template SS confidence
				587	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.
		375	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	I	R	R	A	G	D	V	I	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	W	E	I	T	G	A	E	F	S	K
Template Known Secondary structure								S
Template Predicted Secondary structure
Template SS confidence
		694	.	.	.	.	.	700	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions