Job Description P15042 Confidence 100.00% Date Thu Jan 5 11:34:23 GMT 2012 Rank 6 Aligned Residues 307 % Identity 45% Template c3jslA_ PDB info PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: crystal structure of the adenylation domain of nad+-2 dependent dna ligase from staphylococcus aureus Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	E	Q	Q	L	T	E	L	R	T	T	L	R	H	H	E	Y	L	Y	H	V	M	D	A	P	E	I	P	D	A	E	Y	D	R	L	M	R	E	L	R	E	L	E	T	K	H	P	E	L	I	T	P	D	S	P	T	Q	R	V	G	A	A	P	L	A	A	F	S	Q	I	R	H	E	V	P	M	L	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	S	S	R	V	N	E	L	H	D	L	L	N	Q	Y	S	Y	E	Y	Y	V	E	D	N	P	S	V	P	D	S	E	Y	D	K	L	L	H	E	L	I	K	I	E	E	E	H	P	E	Y	K	T	V	D	S	P	T	V	R	V	G	G	E	A	Q	A	S	F	N	K	V	N	H	D	T	P	M	L	S	L
Template Known Secondary structure																							T	S				S	S																				G	G	G			T	T		G	G	G	G	G			S											S	S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	V	F	D	E	E	S	F	L	A	F	N	K	R	V	Q	D	R	L	K	N	N	E	K	V	T	W	C	C	E	L	K	L	D	G	L	A	V	S	I	L	Y	E	N	G	V	L	V	S	A	A	T	R	G	D	G	T	T	G	E	D	I	T	S	N	V	R	T	I	R	A	I	P	L	K	L	H	G	E
Query Conservation
Alig confidence																						.	.	.																																																								.	.
Template Conservation																						.	.	.																																																								.	.
Template Sequence		G	N	A	F	N	E	D	D	L	R	K	F	D	Q	R	I	R	E	Q	I	.	.	.	G	N	V	E	Y	M	C	E	L	K	I	D	G	L	A	V	S	L	K	Y	V	D	G	Y	F	V	Q	G	L	T	R	G	D	G	T	T	G	E	D	I	T	E	N	L	K	T	I	H	A	I	P	L	K	M	K	.	.
Template Known Secondary structure						S															T	.	.	.		S											S									T	T									T	T	S	S				B						T	T		T	T	S		S	B		S	.	.
Template Predicted Secondary structure																						.	.	.																																																								.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.				.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	P	A	R	L	E	V	R	G	E	V	F	L	P	Q	A	G	F	E	K	I	N	E	D	A	R	R	T	G	G	K	V	F	A	N	P	R	N	A	A	A	G	S	L	R	Q	L	D	P	R	I	T	A	K	R	P	L	T	F	F	C	Y	G	V	G	V	L	E	G	G	E	L	P	D	T	H	L	G	R
Query Conservation
Alig confidence		.																																																																									.
Template Conservation		.																																																																									.
Template Sequence		.	E	P	L	N	V	E	V	R	G	E	A	Y	M	P	R	R	S	F	L	R	L	N	E	E	K	E	K	N	D	E	Q	L	F	A	N	P	R	N	A	A	A	G	S	L	R	Q	L	D	S	K	L	T	A	K	R	K	L	S	V	F	I	Y	S	V	N	D	F	T	D	F	N	A	.	R	S	Q	S	E	A
Template Known Secondary structure		.	S																									B	T	T	B					S	S										S		S								S										S			T	T				.	S	B
Template Predicted Secondary structure		.																																																																									.
Template SS confidence
			158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	Q	F	K	K	W	G	L	P	V	S	D	R	V	T	L	C	E	S	A	E	E	V	L	A	F	Y	H	K	V	E	E	D	R	P	T	L	G	F	D	I	D	G	V	V	I	K	V	N	S	L	A	Q	Q	E	Q	L	G	F	V	A	R	A	P	R	W	A	V	A	F	K	F	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	E	L	D	K	L	G	F	T	T	N	K	N	R	A	R	V	N	N	I	D	G	V	L	E	Y	I	E	K	W	T	S	Q	R	E	S	L	P	Y	D	I	D	G	I	V	I	K	V	N	D	L	D	Q	Q	D	E	M	G	F	T	Q	K	S	P	R	W	A	I	A	Y	K	F	P
Template Known Secondary structure									T					T	T					S	S															G	G	G	S	S	S										S	B									B		S	S	S	B	T	T
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions