Job Description P15042 Confidence 99.19% Date Thu Jan 5 11:34:23 GMT 2012 Rank 19 Aligned Residues 220 % Identity 23% Template c3gdeA_ PDB info PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: the closed conformation of atp-dependent dna ligase from2 archaeoglobus fulgidus Resolution 2.30 Å

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		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	M	L	S	L	D	N	V	F	D	E	E	S	F	L	A	F	N	K	R	V	Q	D	R	L	K	N	N	E	K	V	T	W	C	C	E	L	K	L	D	G	L	A	V	S	I	L	Y	E	N	G	V	L	V	S	A	A	T	R	G	D	G	T	T	G	E	D	I	T	S	N	V	R	T	I	R	A	I	P	L
Query Conservation
Alig confidence						.															.	.	.	.	.	.	.	.	.	.	.	.																						.							.	.	.	.
Template Conservation						.															.	.	.	.	.	.	.	.	.	.	.	.																						.							.	.	.	.
Template Sequence		M	M	L	A	.	Q	V	A	E	S	L	E	S	A	V	R	E	M	R	.	.	.	.	.	.	.	.	.	.	.	.	T	A	A	V	E	W	K	F	D	G	S	R	V	Q	V	H	W	D	G	S	R	.	V	T	I	Y	S	R	.	.	.	.	R	L	E	N	V	T	N	A	L	P	D	I	V	E	E	I	K
Template Known Secondary structure						.				S									S	S	.	.	.	.	.	.	.	.	.	.	.	.	S								S	S									S	S		.						T	.	.	.	.	T			B		G	G	G
Template Predicted Secondary structure						.															.	.	.	.	.	.	.	.	.	.	.	.																						.							.	.	.	.
Template SS confidence
		225	.	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.													.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.					270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	H	G	E	N	I	P	A	R	L	E	V	R	G	E	V	F	L	P	Q	A	G	F	E	K	I	N	E	D	A	R	R	T	G	G	K	V	F	A	N	P	R	N	A	A	A	G	S	L	R	Q	L	D	P	R	I	T	A	K	R	P	L	T	F	F	C	Y	G	V	G	V	L	E	G	G	E	L	P	D
Query Conservation
Alig confidence				.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	S	.	.	.	.	V	K	P	G	V	I	L	D	G	E	V	I	A	V	K	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	M	P	F	Q	H	V	L	R	R	F	R	R	D	V	A	K	M	V	E	K	I	P	L	E	A	H	F	F	D	I	L	Y	H	D	G	E	C	I	D	L
Template Known Secondary structure				.	.	.	.	B		S	S												T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T							S													S	S	B		T	T	S
Template Predicted Secondary structure				.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		287	.					.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.																.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.					.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																				.	.	.	.
Query SS confidence																				.	.	.	.
Query Sequence		T	H	L	G	R	L	L	Q	F	K	K	W	G	L	P	V	S	D	.	.	.	.	R	V	T	L	C	E	S	A	E	E	V	L	A	F	Y	H	K	V	E	E	D	R	P	T	L	G	F	D	I	D	G	V	V	I	K	V	N	S	L	A	Q	Q	E	Q	L	G	F	V	A	R	A	P	R	W	A	V	A	F
Query Conservation																				.	.	.	.
Alig confidence																				.	.	.	.																								.	.	.	.	.	.													.	.	.	.										.
Template Conservation																																															.	.	.	.	.	.													.	.	.	.										.
Template Sequence		P	L	R	E	R	R	K	L	L	E	S	A	V	N	E	S	E	K	I	K	L	A	K	Q	I	V	T	D	S	V	D	E	V	R	K	M	Y	D	E	A	I	S	A	G	H	.	.	.	.	.	.	E	G	V	M	I	K	L	P	S	S	P	Y	.	.	.	.	I	P	G	K	R	G	K	N	W	.	L	K	V
Template Known Secondary structure		B												B				S	S										S															T	T		.	.	.	.	.	.								T	T		B		.	.	.	.		T	T							.
Template Predicted Secondary structure																																															.	.	.	.	.	.													.	.	.	.										.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.							.	.	.	.	.	400	.	.	.	.	.	.					.	.	.	410	.	.	.	.	.		.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.			340	.	.	.	.	.
Predicted Secondary structure																					.								.	.
Query SS confidence																					.								.	.
Query Sequence		K	F	P	A	Q	E	Q	M	T	F	V	R	D	V	E	F	Q	V	G	.	R	T	G	A	I	T	P	.	.	V	A	R	L	E	P
Query Conservation																					.								.	.
Alig confidence																					.								.	.
Template Conservation
Template Sequence		K	A	I	M	E	T	L	D	L	V	V	V	G	G	E	W	G	E	G	K	R	S	H	W	L	S	S	F	E	L	A	C	L	D	P
Template Known Secondary structure			S	S																T	T	G	G	G	S											T
Template Predicted Secondary structure
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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